Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I16
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   201   5e-52
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   192   3e-49
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   192   3e-49
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    33   0.24 
At1g29195.1 68414.m03572 expressed protein                             30   1.7  
At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger) fa...    28   9.1  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  201 bits (490), Expect = 5e-52
 Identities = 85/116 (73%), Positives = 104/116 (89%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKN 121



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = +2

Query: 470 QDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQLNGGTIEDKVKW 646
           + E G+K I+   +KM +YCSV+RV+AHTQ++ +K  +QKKAH+ EIQ+NGG I  KV +
Sbjct: 138 ETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDY 197

Query: 647 AXEHLEKPIP 676
           A    EK +P
Sbjct: 198 ACSLFEKQVP 207



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +3

Query: 678 VDSVFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
           VD++F +DEMID IGV KG G +GV +       P   H+GL K A
Sbjct: 208 VDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVA 253


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  192 bits (467), Expect = 3e-49
 Identities = 83/116 (71%), Positives = 100/116 (86%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
 Frame = +2

Query: 467 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 643
           +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV 
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVD 196

Query: 644 WAXEHLEKPIP 676
           +A    EK IP
Sbjct: 197 FAYSFFEKQIP 207



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +3

Query: 678 VDSVFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
           +++VF +DEMID IGV KG G +GV +       P   H+GL K A
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVA 253


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  192 bits (467), Expect = 3e-49
 Identities = 83/116 (71%), Positives = 100/116 (86%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
 Frame = +2

Query: 467 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 643
           +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV 
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVD 196

Query: 644 WAXEHLEKPIP 676
           +A    EK IP
Sbjct: 197 FAYSFFEKQIP 207



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +3

Query: 678 VDSVFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
           +++VF +DEMID IGV KG G +GV +       P   H+GL K A
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVA 253


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 20/80 (25%), Positives = 36/80 (45%)
 Frame = -2

Query: 411 IKPHAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVD 232
           IK    F   T T  R+   P     A ++    ++N + T+ +  L  G++L+ LFL+ 
Sbjct: 40  IKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLS 97

Query: 231 F*TGTVRFSNHVGHTGLITD 172
           F       + H G+  ++ D
Sbjct: 98  FSPTLAEIAAHAGYDYVVVD 117


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 160 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 282
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 357

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -1

Query: 415 LNQTPCSFCRSDVDSLQTYAPPRQSTERVVHEG 317
           LN   CS C   + S    AP R S   V H G
Sbjct: 148 LNAESCSICLQSLVSSSKTAPTRMSCSHVFHNG 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,403
Number of Sequences: 28952
Number of extensions: 363946
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)