Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I15
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 240 1e-63
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 240 1e-63
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 239 2e-63
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 48 6e-06
At3g50610.1 68416.m05534 hypothetical protein 29 3.0
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 3.0
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 3.9
At5g13260.1 68418.m01523 expressed protein 28 6.8
At1g33410.1 68414.m04136 expressed protein 28 6.8
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 9.0
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 9.0
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 9.0
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 240 bits (587), Expect = 1e-63
Identities = 124/253 (49%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +3
Query: 93 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 272
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 273 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 446
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 447 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 626
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 627 NISPFSYGLVC*AGI*FWNYFCT*NSGHQTRRSPCQVQAGVANVXALSLAIGYPTIASAP 806
I PFSYGLV + + F + + +G++ V +L+LA+ YPT+A+AP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240
Query: 807 HSIANGFXNLLGI 845
H N + N L I
Sbjct: 241 HMFINAYKNALAI 253
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +1
Query: 652 LFVKQVYDSGTIFAPEILDIKPEDLRAKF 738
L V+ VYD+G++F+PE+LD+ + L KF
Sbjct: 189 LVVQSVYDNGSVFSPEVLDLTEDQLVEKF 217
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 240 bits (587), Expect = 1e-63
Identities = 124/253 (49%), Positives = 169/253 (66%), Gaps = 2/253 (0%)
Frame = +3
Query: 93 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 272
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 273 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 446
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 447 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 626
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 627 NISPFSYGLVC*AGI*FWNYFCT*NSGHQTRRSPCQVQAGVANVXALSLAIGYPTIASAP 806
I PFSYGLV + + F + + +G++ V +L+LA+ YPT+A+AP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240
Query: 807 HSIANGFXNLLGI 845
H N + N L I
Sbjct: 241 HMFINAYKNALAI 253
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +1
Query: 652 LFVKQVYDSGTIFAPEILDIKPEDLRAKF 738
L V+ VYD+G++F+PE+LD+ + L KF
Sbjct: 189 LVVQSVYDNGSVFSPEVLDLTEDQLVEKF 217
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 239 bits (584), Expect = 2e-63
Identities = 126/248 (50%), Positives = 165/248 (66%), Gaps = 2/248 (0%)
Frame = +3
Query: 108 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 287
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 288 KDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVI 461
+ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126
Query: 462 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 641
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PF
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186
Query: 642 SYGLVC*AGI*FWNYFCT*NSGHQTRRSPCQVQAGVANVXALSLAIGYPTIASAPHSIAN 821
SYGLV + + F + AGV+ + ALSLAI YPT+A+APH N
Sbjct: 187 SYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLN 246
Query: 822 GFXNLLGI 845
+ N+L +
Sbjct: 247 AYKNVLAV 254
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +1
Query: 652 LFVKQVYDSGTIFAPEILDIKPEDLRAKF 738
L V+ VYD+G++F PE+L++ +DL KF
Sbjct: 190 LVVESVYDNGSVFNPEVLNLTEDDLVEKF 218
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 48.4 bits (110), Expect = 6e-06
Identities = 35/178 (19%), Positives = 82/178 (46%), Gaps = 5/178 (2%)
Frame = +3
Query: 141 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PA 314
I + +++Y ++ +N+ + + ++ R R + +G N +M+ A+ ++
Sbjct: 30 IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSG 89
Query: 315 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPE 491
+ K+ ++G+ G + T EV + +R G+IA +V + E
Sbjct: 90 IYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHE 149
Query: 492 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVC 659
+ L +P +++KGT+E++ D + + G ++ A +L +L ++ F L+C
Sbjct: 150 MEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLC 207
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 291 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 467
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 468 HNTGLGPEK 494
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 303 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 401
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 3.9
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -2
Query: 616 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAM 437
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 436 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 302
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 252 ARYWSHVARYGSAASVASPRYRH 184
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 202 RNRCSRSVSRYVAPVSCSW--EKTQ*CAKPSKTTWTTIQPSRNCC 330
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 454 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 341
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 313 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 417
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -1
Query: 470 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 324
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,863,671
Number of Sequences: 28952
Number of extensions: 434058
Number of successful extensions: 1215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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