Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I13
(835 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 291 5e-79
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 281 3e-76
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 256 2e-68
At2g22340.1 68415.m02651 hypothetical protein 33 0.31
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.41
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.2
At3g29760.1 68416.m03758 NLI interacting factor (NIF) family pro... 29 3.8
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 5.0
At2g34150.1 68415.m04180 expressed protein 29 5.0
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 6.6
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 291 bits (713), Expect = 5e-79
Identities = 135/221 (61%), Positives = 167/221 (75%), Gaps = 1/221 (0%)
Frame = +2
Query: 86 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 265
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 266 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 445
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 446 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 625
DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
Query: 626 VLPRDQRWDVVVDLFFYRDPEESE-KDEQQAKEQAVVPA*P 745
+ Q+WDV+VDLFFYR+PEE++ +DE +A QA A P
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALP 232
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 281 bits (690), Expect = 3e-76
Identities = 127/211 (60%), Positives = 164/211 (77%), Gaps = 1/211 (0%)
Frame = +2
Query: 98 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 277
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 278 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 457
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 458 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 637
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 638 DQRWDVVVDLFFYRDPEESEKD-EQQAKEQA 727
Q+WDV+VDLFFYR+PEE++++ +++A+ QA
Sbjct: 197 AQKWDVMVDLFFYREPEEAKQEGDEEAEVQA 227
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 256 bits (626), Expect = 2e-68
Identities = 115/189 (60%), Positives = 144/189 (76%)
Frame = +2
Query: 98 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 277
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 278 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 457
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 458 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 637
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 638 DQRWDVVVD 664
Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 136 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 255
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 419 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 568
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 374 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 475
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g29760.1 68416.m03758 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 465
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 711 KPRNRLWYQLNXKLXAPWSMKDWNET 788
K NRLW + + +L PW M D+NET
Sbjct: 410 KDLNRLWEKHDPRL--PWKMGDYNET 433
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 515 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 652
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 547 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 377
D +H+ W S + FSN L + +Q +QE+ E S D S TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 202 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 324
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,258,605
Number of Sequences: 28952
Number of extensions: 463590
Number of successful extensions: 1141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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