Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I12
         (918 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    43   4e-06
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    43   4e-06
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    40   2e-05
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    39   6e-05
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    39   6e-05
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    28   0.12 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   4.4  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +3

Query: 147 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 323
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 324 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 419
            +LW+PDV++ N+A     G +     V +NGS
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +3

Query: 147 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 323
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 324 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 419
            +LW+PDV++ N+A     G +     V +NGS
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 147 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 323
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 324 ERLWRPDVVLLNAA 365
            +LW+PDV++ N+A
Sbjct: 83  NKLWKPDVLMYNSA 96


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 246 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 365
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 246 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 365
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 19/89 (21%), Positives = 29/89 (32%)
 Frame = +1

Query: 550 FVIXXFXIXLCSYXXDXXMXTXLSXFXXLFXYXFLIXXXFFXXXXXFFFXVXXLFXXLXF 729
           F+I      LC+Y         L  +   F Y F+I           ++ V  LF  L  
Sbjct: 89  FIIFTVHFLLCTYYFYYAFIILLCVYY--FYYAFIIFTVHLLFLLCIYYFVVPLFFLLCI 146

Query: 730 SFXFFFXXXFCFLFLXFCXXFXXFCLXIL 816
            + +     F    L     +  FC  I+
Sbjct: 147 YYFYCAFIIFTVHLLFLLCIYHFFCAFII 175


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 434 LYXG-DGAVIRYTGAESVVPGGGC 366
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,198
Number of Sequences: 336
Number of extensions: 2700
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)