Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I11
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.29
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.29
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 29 0.90
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.2
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 28 2.1
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.8
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 4.8
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 8.4
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 8.4
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.29
Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 1/160 (0%)
Frame = +3
Query: 282 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 461
T T S + + +S Y + + + S P PVT C T+ V
Sbjct: 541 TSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYT 600
Query: 462 GVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKS-PIPYTNHPRLNIHFHQSPER 638
+ + S+S + +T P + + S IP T+ R + F S
Sbjct: 601 STPITSPNSTSS---SSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 639 RTKRSSRRGLKPPLSSEAPSAYLTPSSLGMAKGVSPPLFS 758
T SS +SE+ S Y ++ PP S
Sbjct: 658 STSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTS 697
Score = 28.7 bits (61), Expect = 1.2
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +3
Query: 276 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 455
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 456 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 596
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +3
Query: 288 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 461
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 462 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 596
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 538 SPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRA 660
S IS +ST N FH PT TS S A KGV +
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNS 841
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.90
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 559 STRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGG*SLRCHQRL 693
S R+ +P+F +P ++S + NP A L ++ L+ H L
Sbjct: 196 SNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCKLKSHNSL 240
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 276 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 446
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 447 DVTVEGVNVLATPSSS 494
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 582 IPYT--NHPRLNIHFHQSPERRTKRSSRRGLKPPLSSEAPSAYLTPS 716
+PYT NHP+ +I FH E + KP ++S+A +A + S
Sbjct: 27 LPYTARNHPQFSIWFHNDFEPVKDLKALLKDKPQIASQAVTALVNVS 73
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 523 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 404
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 371
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 535 PSPAISATSTRSSN---PRFHTPTTPD 606
P P+IS T+T SS H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 339 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 428
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 757 ENKGGETPLAMPSDEGVRYADGASDDN 677
+NK GE P S E A G+SD+N
Sbjct: 139 KNKNGEEPETSTSVENAESAKGSSDEN 165
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 508 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 374
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 99 GVWKKRKH*PRREWPKRQKRXKAQF 25
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,493,379
Number of Sequences: 5004
Number of extensions: 73554
Number of successful extensions: 297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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