Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I09
(849 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 240 9e-64
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 49 4e-06
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 48 1e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 44 1e-04
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 42 8e-04
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 39 0.004
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 39 0.006
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.024
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.055
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.096
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.13
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 34 0.17
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.22
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 33 0.29
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.39
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.51
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.68
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 30 2.1
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_51941| Best HMM Match : fn3 (HMM E-Value=2.1e-11) 30 2.7
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 29 3.6
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 29 3.6
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 29 6.3
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 28 8.3
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 240 bits (588), Expect = 9e-64
Identities = 115/176 (65%), Positives = 138/176 (78%)
Frame = +3
Query: 84 MFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALC 263
MFS + A+NS PLS A+C S V + + + ASAA SCEFGS KY+ALC
Sbjct: 1 MFSRYFETAKNSTLGDPLSVAKCPSDVR--SHRNSSRLMASAAGEQHSCEFGSAKYYALC 58
Query: 264 GVGGVLSRGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFI 443
G GG+LS GLTHTAVVPLDLVKCR+QVD +KY ++VNGFK++++E+GVRGLA+GWAPTFI
Sbjct: 59 GFGGILSCGLTHTAVVPLDLVKCRIQVDPKKYGSMVNGFKITLKEDGVRGLARGWAPTFI 118
Query: 444 GYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASAEFIADIALSPME 611
GYSMQGL KFGFYEVFK+ Y ML +E +Y YRT +YLAASASAEF ADIAL+PME
Sbjct: 119 GYSMQGLGKFGFYEVFKIMYGNMLGEEYSYLYRTSLYLAASASAEFFADIALAPME 174
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 604 PWKAAKVRIQTMPGFASTLREAWPKMVXNEG 696
P +A KVRIQT PG+A TLRE PK++ EG
Sbjct: 172 PMEAVKVRIQTQPGWAGTLREGVPKLMKEEG 202
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +3
Query: 312 PLDLVKCRLQV-DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 488
PLD+V+ RL + +KY ++N F R+EG+R +G+ PT IG F YE
Sbjct: 9 PLDMVRARLAITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYET 68
Query: 489 FKVAYAGMLDDETAYTYRTFVYLAAS 566
K A+ D + + + A +
Sbjct: 69 CKKAFGEFYDGKKPTPFHRLAFGACA 94
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 48.4 bits (110), Expect = 7e-06
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +3
Query: 264 GVGGVLSRGLTHTAVVPLDLVKCRLQVDAEKYK--NVVNGFKVSVREEGVRGLAKGWAPT 437
G GG L+ G++ TA PLD +K LQV A +V+GFK+ +RE G++ L +G
Sbjct: 141 GGGGALA-GVSRTATAPLDRLKVLLQVQASSTNRFGIVSGFKMMLREGGIKSLWRGNGAN 199
Query: 438 FIGYSMQGLCKFGFYEVFK 494
I + + KF YE K
Sbjct: 200 VIKIAPESGIKFFAYEKAK 218
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVVPLDLVKCRLQV-DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFI 443
+ G ++ + T++ PL+++K RL + +Y+ +++ V ++EG+R +G P+ +
Sbjct: 235 LAGSMAGVASQTSIYPLEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLL 294
Query: 444 GYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASAEFIADIALSPM 608
G YE K Y +++A V LA ++ +A P+
Sbjct: 295 GIIPYAGIDLAVYETLKNFYLNYHKNQSA-DPGVLVLLACGTASSTCGQLASYPL 348
Score = 34.7 bits (76), Expect = 0.096
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQVDAEKY-----KNVVNGFKVSVREEGVRGLAKGWAPT 437
G S A PL LV+ RLQ A + N+V+ + + E+G +GL +G AP
Sbjct: 334 GTASSTCGQLASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLYRGLAPN 393
Query: 438 FI 443
F+
Sbjct: 394 FL 395
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 48.0 bits (109), Expect = 1e-05
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQVDAE----KYKNVVNGFKVSVREEGVRGLAKGWAPTF 440
G ++ + + PLD+V+ R+Q++ KY + +GFKV VR EG GL KG P
Sbjct: 688 GAVAGAVAQSGTYPLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNL 747
Query: 441 IGYSMQGLCKFGFYEVFKVA-YAGM 512
+ + +F YEV K A YA M
Sbjct: 748 LKVAPTIGIQFAVYEVSKSAMYARM 772
Score = 32.7 bits (71), Expect = 0.39
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +3
Query: 258 LCGVGGVLSRGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPT 437
L G+ G++ G+T + + L ++QV KY V R+EG+ G KG
Sbjct: 559 LTGLLGIMGGGVTSLYIFTI-LNSFQIQVTNAKYSGVGGTLAKIYRDEGLYGYFKGNGTN 617
Query: 438 FIGYSMQGLCKFGFYEVFKVAYA 506
+ +F YE FK A
Sbjct: 618 IVRIVPYTAVQFAAYEEFKKGIA 640
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Frame = +3
Query: 300 TAVVPLDLVKCRLQ-----VDAEK-YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQG 461
TAV P+DLVK R+Q ++AEK YKN ++ F VR EG GL +G P +G S +
Sbjct: 929 TAVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEK 988
Query: 462 LCK 470
K
Sbjct: 989 AIK 991
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGV-RGLAKGWAP 434
G L+ + T PLD+V+ R+Q+ D KY +N F E+G+ RGL +G +
Sbjct: 113 GALAGATSQTLAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSI 172
Query: 435 TFIGYSMQGLCKFGFYEVFK 494
++ Q F YEV K
Sbjct: 173 NYLRVCPQVAVMFAVYEVVK 192
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTF 440
+ V S + T P D++K R+ + Y+ V F ++V EG+ L KGW PT+
Sbjct: 305 MSSVCSGLVAATISTPADVIKTRIMNNPSGYQGAVECFMLAVHREGLLSLYKGWLPTW 362
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVVPLDLVKCRLQVDAEKY--------KNVVNGFKVSVREEGVRGLAK 422
+ G+ + L P DLVK ++Q++ + + + F+ V + G RGL K
Sbjct: 136 ISGMSAGALGQFISSPTDLVKVQMQMEGRRLSFYPISSVRGTFHAFRNIVDKYGFRGLWK 195
Query: 423 GWAP 434
GW P
Sbjct: 196 GWLP 199
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQVDAEK----YKNVVNGFKVSVREEGVRGLAKGWAPTF 440
G L+ ++ TA PLD+V+ R+Q+ + YK+ ++ F V+ EG RGL KG P
Sbjct: 168 GSLAGAVSQTATYPLDVVRRRMQMKGIRADFAYKSTLHAFSSIVKLEGFRGLYKGMWPNI 227
Query: 441 I 443
+
Sbjct: 228 L 228
Score = 39.5 bits (88), Expect = 0.003
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Frame = +3
Query: 246 KYFALCGVGGVLSRGLTHTAVVPLDLVKCRLQVDAE--KYKNVVNGFKVSVREEGVRGLA 419
K+ G+ G +SR T+V PL+ VK LQ+ + K+K V+ +EEG+ G
Sbjct: 36 KHLLAGGIAGAVSR----TSVSPLERVKILLQIQVKNPKFKGVLPTLIQIGKEEGILGYF 91
Query: 420 KGWAPTFIGYSMQGLCKFGFYEVFK---VAYAGMLDDETAYTYRTFVYLAASASAE 578
KG I +F YE +K Y G L+ T + F++ AS++
Sbjct: 92 KGNGTNVIRIFPYSAVQFAAYEEYKKGIAPYVG-LNFAVYETLKGFLFSTVMASSQ 146
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = +3
Query: 252 FALCGVGGVLSRGLTHTAVVPLDLVKCRLQVDAEKYKNVVN--GFKVSVR----EEGVRG 413
F GV++ TH PLD+V+ RL V +++ N G ++R EEG+RG
Sbjct: 32 FVSGATAGVVATASTH----PLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRG 87
Query: 414 LAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASAEFIADI 593
L KG P+ + + + Y++ K+ LD +A+ + +L A A IA
Sbjct: 88 LYKGLVPSLVSIAPFLGVQQSVYDIMKLR---ALD--SAFAANSGTFLVCGAIAGMIAQT 142
Query: 594 ALSPME 611
+ P++
Sbjct: 143 VVHPLD 148
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +3
Query: 252 FALCGVGGVLSRGLTHTAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGVR-G 413
F GV G +S+ T PLD+V+ R+Q+ D KY +N +++G+R G
Sbjct: 176 FVCGGVAGAVSQ----TIAYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDGIRRG 231
Query: 414 LAKGWAPTFIGYSMQGLCKFGFYEVFK 494
L +G + ++ Q FG YEV K
Sbjct: 232 LYRGLSINYLRVCPQVAIMFGVYEVTK 258
Score = 36.7 bits (81), Expect = 0.024
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVV-PLDLVKCRL--QVDAEK-YKNVVNGFK-VSVREEGVRGLAKGWA 431
V G L+ G+T A PLD+V+ RL QV ++ Y + + +SV+E G + L KG+
Sbjct: 69 VAGSLA-GMTACACTYPLDMVRSRLAFQVAQDQGYTTITQTIRCISVKEGGPKALYKGFV 127
Query: 432 PTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYT 536
PT + ++ GFY +F+ A L+ A+T
Sbjct: 128 PTLL--TIVPAMGIGFY-MFETMKAYFLETRIAFT 159
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 312 PLDLVKCRLQVDAEK--YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 485
P +L+K RLQV + Y ++ F +R EGVRGL KG+ + G G C YE
Sbjct: 35 PANLIKIRLQVQRKTTLYNGSLDAFTKVIRTEGVRGLYKGYLVSCAGL-FAGQCYITTYE 93
Query: 486 VFK 494
+ +
Sbjct: 94 LVR 96
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 38.7 bits (86), Expect = 0.006
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Frame = +3
Query: 240 SPKYFA---LCGVGGVLSRGLTHT-AVVPLDLVKCRLQ----VDAE-KYKNVVNGFKVSV 392
S KYF +C G + GL T A +P+D+ K R+Q +D + +YK ++ V
Sbjct: 85 STKYFEDNIVCHFGASMISGLATTVASMPVDIAKTRIQNMRIIDGKPEYKGTMDVLARIV 144
Query: 393 REEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 485
R EGV L KG+ P + + F F E
Sbjct: 145 RNEGVFALWKGFTPYYFRIGPHTVLTFIFLE 175
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 37.1 bits (82), Expect = 0.018
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQVDA-----------EKYKNVVNGFKVSVREEGVRGLA 419
G LS ++ ++P D++K R+QV ++Y V + F+ ++EEG GL
Sbjct: 36 GALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLF 95
Query: 420 KGWAPT 437
KG AP+
Sbjct: 96 KGLAPS 101
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 36.7 bits (81), Expect = 0.024
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVVPLDLVKCRLQVDAEK-----YKNVVNGFKVSVREEGVRGLAKGWA 431
+ G S + V P +++K RL V YK + + K +REEG+ L KG
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVT 216
Query: 432 PTFIG 446
P+F+G
Sbjct: 217 PSFLG 221
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 35.5 bits (78), Expect = 0.055
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Frame = +3
Query: 312 PLDLVKCRLQVDAEK--------------YKNVVN-GFKVSVREEGVRGLAKGWAPTFIG 446
P+++VK R+Q+D E YK ++ G REEGVRGL +G P +
Sbjct: 26 PIEVVKIRMQLDNELGSKHNSKDIFRERYYKGLIRTGLSRVYREEGVRGLYRGIFPALLR 85
Query: 447 YSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAASASAEFIADIALSPME 611
++ + G YE K G D +A ++ V A S+ I +P +
Sbjct: 86 QAIYSSTRLGAYEPIK-NLLGATDSTSAALWKKIV---AGVSSGVIGSAIATPTD 136
Score = 34.7 bits (76), Expect = 0.096
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVVPLDLVKCRLQV----DAEKYKNVVNGFKVSVREEGVRGLAKGWAP 434
V GV S + P DLVK R Q + YKN+ + F ++EG GL G P
Sbjct: 119 VAGVSSGVIGSAIATPTDLVKIRFQAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKP 178
Query: 435 T 437
T
Sbjct: 179 T 179
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVV-PLDLVKCRLQVDAEK-------YKNVVNGFKVSVREEGVRGLAK 422
+ L G T V P+D+V+ R + Y+ ++ +VR EG+ L K
Sbjct: 215 LASALVAGFVATCVASPVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYK 274
Query: 423 GWAPTFIGYSMQGLCKFGFYEVFKVAYAGM 512
G+ P + + + F YE + YAG+
Sbjct: 275 GFFPNWTRTGLDTIIIFFVYERLR-RYAGL 303
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 35.1 bits (77), Expect = 0.073
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 333 RLQVDA-EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 488
R + DA +K GF ++ +EEG L K T YS++GL KF FYEV
Sbjct: 909 RTKPDATDKVYGEFQGFNITYKEEGGGTLYKTADHTKRSYSIKGLKKFTFYEV 961
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 34.7 bits (76), Expect = 0.096
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQVD----AEKYKNVVNGFKVSVREEGVRGLAKGWAPT 437
G+++ T + PLD VKC LQ++ Y V+ + RE GVRG+ KG + T
Sbjct: 144 GMIAGVATSFVLTPLDRVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVT 202
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = +3
Query: 267 VGGVLSRGLTHTAVVPLDLVKCRLQV-------DAEKYKNVVNGFKVSVREEGVRGLAKG 425
+ G +S L A PLDL+K RLQ + +K ++ F +VR EG+RGL KG
Sbjct: 25 IAGSVSGMLGCAAGQPLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKG 84
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 312 PLDLVKCRLQVDAEKYKNVVNGFKVSVR----EEGVRGLAKGWAPTFI 443
P + +KC LQV+A + +G V+ EEGVRG+ +G PT I
Sbjct: 140 PAERIKCILQVEAGASGSTQSGPYAIVKRIYAEEGVRGIFRGLPPTMI 187
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQVDAEK-----YKNVVNGFKVSVREEGVRGLAKGWAPT 437
G S + V P +++K RL V YK + + K +REEG+ L KG P+
Sbjct: 428 GTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPS 487
Query: 438 FI 443
F+
Sbjct: 488 FL 489
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +3
Query: 273 GVLSRGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYS 452
G+++ + P D+VK RLQ++ Y + + G+ GL +G P + +
Sbjct: 530 GIMAGAMASVVTQPADVVKTRLQMNPYMYPSNRAAVVAIIEAGGIEGLFRGLVPRTVRRT 589
Query: 453 MQGLCKFGFYE 485
+ + YE
Sbjct: 590 LMSAMAWTIYE 600
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 33.1 bits (72), Expect = 0.29
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Frame = +3
Query: 198 AASAAVPTESCEFGSPKYFALCGVGGVLSRGLTHTAVV-PLDLVKCRLQVDAEK------ 356
A+ A E P+Y+A CG G GL + P+DL K ++QV +
Sbjct: 187 ASFAGKEREGQRLTLPEYYA-CGAG----TGLVVAFIEGPIDLFKSKMQVQIIRAQSGAP 241
Query: 357 --YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFK 494
Y+NV + + G+RG +G + T + FGFYE K
Sbjct: 242 IQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGFFFGFYEFTK 289
>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +2
Query: 539 PYLRVPGGVC------VGGIHRRHRPVAHGRRLRSVSKPCLVSR 652
P R GGVC VG +HR RPV R++ S CL SR
Sbjct: 504 PTFRKAGGVCTWTPGVVGQLHREKRPVRSLRKMASEDNTCLSSR 547
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 291 LTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKV---SVREEGVRGLAKGWAPTFIGYSMQG 461
+ HT PL +K RLQ++ + + FK+ + + EG+R +G +++G S +
Sbjct: 847 INHTVTNPLWFIKTRLQLENQGGTR-ASAFKIVSMAYKAEGIRAFYRGLTASYVGIS-ET 904
Query: 462 LCKFGFYEVFK 494
+ F YE K
Sbjct: 905 VVHFTIYERLK 915
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 32.3 bits (70), Expect = 0.51
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +3
Query: 303 AVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTF-IGYSMQGLCKFGF 479
A+ P++++K RLQ+ Y+ V++ +EEG+R + + + Q L F
Sbjct: 14 AMNPIEVIKQRLQMYGSPYRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTL-HFTV 72
Query: 480 YEVFKVAYAGMLDDETAYTYRTFVYLAASASAEFIADIALSPME 611
YE + A L+ Y +T V A+A A +A +P++
Sbjct: 73 YEYARKA----LNPLGGYDPKTHVIAGATAGA--VASAITTPLD 110
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 31.9 bits (69), Expect = 0.68
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +3
Query: 237 GSPKYFALCGVGGVLSRGLTHTAVVPLDLVKCRLQVDAE----KYKNVVNGFKVSVREEG 404
G Y G GV+S T P D++K R+Q D +YK +++ S +EEG
Sbjct: 131 GVATYLMAGGFAGVVSWASTF----PFDVIKSRIQADGNLGKFRYKGMMDCALQSYKEEG 186
Query: 405 VRGLAKGWAPTFIGYSMQGL 464
+ +G PT + +Q L
Sbjct: 187 MIVFTRGIWPTLLRGFLQVL 206
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 300 TAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW-APTFI 443
TA PLD +K RLQ A ++ +V+ EGVRGL KG AP +
Sbjct: 85 TAGQPLDTIKVRLQ--ASFGAGPLDMLARTVKTEGVRGLYKGMLAPVLV 131
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = +1
Query: 601 RPWKAAKVRIQTMPGFASTLREAWPKMVXNEGYGTFYKGLVPLWGXQIPYTMXXLACFER 780
+P+ KV++QT P + + K EG+ Y G +P I + +
Sbjct: 28 QPFDTIKVKMQTFPSMSKNALDCGIKTFKQEGFKGLYAGTIPSLAANIAENSFLFLFYGQ 87
Query: 781 TLELL 795
L L+
Sbjct: 88 CLSLI 92
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/100 (22%), Positives = 36/100 (36%)
Frame = +3
Query: 312 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEVF 491
P D +K ++Q KN ++ + ++EG +GL G P+ + F FY
Sbjct: 29 PFDTIKVKMQTFPSMSKNALDCGIKTFKQEGFKGLYAGTIPSLAANIAENSFLFLFYGQC 88
Query: 492 KVAYAGMLDDETAYTYRTFVYLAASASAEFIADIALSPME 611
+ + F A + A F L P E
Sbjct: 89 LSLIKTLTGKKHESELTIFHNACAGSGAAFFMSFVLCPAE 128
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/57 (42%), Positives = 28/57 (49%)
Frame = +2
Query: 584 RRHRPVAHGRRLRSVSKPCLVSRAPSARRGRRWSXTKVTXRSTRAWCRSGAXRSRTR 754
R H P AH RR RS S+ SR+P RR R + RS RS RSR+R
Sbjct: 212 RSHSP-AHHRRSRSRSR----SRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSR 263
>SB_51941| Best HMM Match : fn3 (HMM E-Value=2.1e-11)
Length = 155
Score = 29.9 bits (64), Expect = 2.7
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Frame = +3
Query: 171 VAIEQTGGMAASAAVPTESCEFGS-PKY--FALCGVGGVLSRGLTHTAVVPLDLVKCRLQ 341
++ + GG + VPT S E + KY + + G + G T V R +
Sbjct: 27 ISYHKDGGSNETTEVPTTSFEINNLAKYTKYTIKVRGYTVKEGPWSTPGV------ARTK 80
Query: 342 VDA-EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 488
DA +K GF ++ +EEG L K T + GL KF +YEV
Sbjct: 81 PDATDKIYGEFQGFNITYKEEGGGTLYKTTNHTTRSCIITGLKKFTYYEV 130
>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 619 KVRIQTMPGFASTLREAWPKMVXNEGYGTFYKGLVPLWGXQIPYTMXXLACFERT 783
+V+I T TL P + +G TFY V LW + +T+ A F +T
Sbjct: 433 EVKIGTYDSIHGTLILDGPSKLIWQGTITFYDDQVKLWTLSVGFTLAYGAMFSKT 487
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +3
Query: 261 CGVGGVLSRGLTHTAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGVRGLAKG 425
C G L+ AV PLD++K RLQ+ Y +++ K EG+ KG
Sbjct: 208 CLGAGCLAGMTASVAVNPLDVIKTRLQLLNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKG 267
Query: 426 WAPTFI 443
P I
Sbjct: 268 AVPRMI 273
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +3
Query: 312 PLDLVKCRLQVDAEK---------YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGL 464
PL++VK R+Q+ E Y+NV + + EG+ + KG P I +
Sbjct: 24 PLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAMQKGLFPALIYQVIMNG 83
Query: 465 CKFGFYEV 488
+ G Y++
Sbjct: 84 TRLGSYQI 91
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 742 SVCPRAAPGPCRTXRNLRX*PSSATPRGGCSRNQA 638
++ P AA P T R R PSS TPR SR ++
Sbjct: 98 TLSPLAASPPVSTPRQQRRTPSSFTPRSSISRRRS 132
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 238 PNSQDSVGTAADAAMPPVCSIATGATVDWHWAGD-SGPRNGEFRAASSNEENIIM 77
P Q T A PPV +G+ D W GD S P+ + R+ N +M
Sbjct: 398 PQPQKPPATRPSATPPPVTGDESGSDYDEDWGGDWSEPKPTQSRSIVGEMRNDLM 452
>SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 152 PVDGRARGYRADRWHGGVCCG 214
P +G+ RG+R GGVCCG
Sbjct: 91 PREGQIRGFRFVHISGGVCCG 111
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 150 CQSTVAPVAIEQTGGMAASAAVPTES 227
C ST PV +QT A+SA VPT S
Sbjct: 154 CLSTARPVTTQQTKKPASSAFVPTTS 179
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 28.7 bits (61), Expect = 6.3
Identities = 32/129 (24%), Positives = 50/129 (38%)
Frame = +3
Query: 102 DAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALCGVGGVL 281
+ AR RG + QC + V+ A GG + S P E + A+ +GGV
Sbjct: 402 EEAREEEGRGVVK-LQCPAAVSHAAGANHGG-SISTQEPEEGVKLVGTTPTAVARIGGVP 459
Query: 282 SRGLTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQG 461
RGL T + + + Q + V +V +G GL + P F +
Sbjct: 460 VRGLVDTDSMVTIVTETFFQDQLQSALGDVQK-NCTVELKGANGLDIPYVPEFKKLMTED 518
Query: 462 LCKFGFYEV 488
+ GF +V
Sbjct: 519 KKRTGFAKV 527
>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 414 LAKGWAPTFIGYSMQGLCKFGFYEVFKV 497
L KGW T ++M G K+G E+ K+
Sbjct: 123 LLKGWGATSFEHAMIGAAKYGHIEIVKL 150
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 614 RLRSVSKPCLVSRAPSARRGRRWSXTKVTXRS-TRAWCRSGAXRSRTR 754
R +S S+ + SR+P+ R R WS T+ RS TR+ RS RSR+R
Sbjct: 411 RTKSRSRSRIRSRSPA--RSRSWSHTRSRSRSHTRSRSRSHT-RSRSR 455
>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 95 VARCGAELSVPWPTIARPVPVDGRARGYRADRWHGGVCCGTHGVL 229
+ RCG + W +P P++GR R W G C +L
Sbjct: 338 IRRCGTH-APGWMVGRQPSPIEGRVRRTVCFNWAGNCCKWRQNIL 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,514,934
Number of Sequences: 59808
Number of extensions: 570738
Number of successful extensions: 1725
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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