Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I08
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.6  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   3.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   4.5  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   5.9  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   5.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   7.8  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.8  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   7.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   7.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 131 GVPQGSALSPLLFSLYINDI 190
           G PQGS +SP+L ++Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 656 RHDVCKRSV--RSRSPHPLEIPSGYSITILQDSR 751
           R DV K+SV   S S  PL++  GYS+ +   SR
Sbjct: 61  RLDVAKKSVYAESESKLPLKMKKGYSVHLKDQSR 94


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 368 KRGRPPNITSSI-PLR**ARKH 430
           KRGRPP I S I PL    RKH
Sbjct: 366 KRGRPPKIASGIVPLSAFTRKH 387


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 495 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSR 602
           LG++    M +  H   + D+   +LGR+ P+LCSR
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 621 NKVTLYKTCIRPVMTYASVVFAHAARTHLKSLQVI 725
           N +T+ ++ +RPV TY S        +HL  + V+
Sbjct: 220 NDITIKESDVRPVSTYHSFALTSDNNSHLYGICVV 254


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 298  HPGTVVPEVANRHQPHEKRS 357
            HP  VV +VAN + PH K S
Sbjct: 1284 HPERVVLKVANSYYPHSKAS 1303


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 345 RKAQRCSSKGVALRTSLRASHSVSRRANTSAVSPITLFGQ 464
           R  Q   S  ++   S RAS  + RR NT    PI  FG+
Sbjct: 266 RSRQSSLSSRLSELPSKRASLEILRRENTFPADPIQEFGE 305


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 131 GVPQGSALSPLLFSLYINDI 190
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +2

Query: 176 YINDIPRSPETHLALFADDTAIYYSCRKMSLLHR 277
           Y+ ++ +SP+ +L +  D++ I    + +S+LH+
Sbjct: 516 YLLELEKSPKNNLLISMDESVIEIVQKSLSVLHK 549


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -1

Query: 517 PLSRVTPRYLTFETHGMGWPKRVMGLTAEVFARLLTEWDARSDVRRAT 374
           P++++ P  LT  T  M +PK ++G+ +E  A    E + RSD  ++T
Sbjct: 868 PINKIQP--LT--TDEMLYPKMLVGIDSEFVALQQEETEVRSDGTKST 911


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,705
Number of Sequences: 5004
Number of extensions: 72700
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)