Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I08
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha prot...    34   0.57 
CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.                34   0.57 
BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directe...    34   0.57 
BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directe...    34   0.57 
AF103198-1|AAD30758.1|  129|Homo sapiens immunoglobulin heavy ch...    32   3.0  
U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein.                 31   5.3  
AC006316-1|AAD29127.1| 2126|Homo sapiens unknown protein.              31   5.3  

>L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha
           protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.57
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 617 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 727
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.57
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 617 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 727
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.57
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 617 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 727
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 34.3 bits (75), Expect = 0.57
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 617 PQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYS 727
           P  G+  + + TP   + KRSV +RSPH L  PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>AF103198-1|AAD30758.1|  129|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 129

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 215 ALFADDTAIYYSCRKMSLLHRRLQIAVATLGQW 313
           +L A+DTA+YY  ++MS++    +I V   G W
Sbjct: 77  SLRAEDTALYYCAKEMSVVEGYEEIVVLPTGNW 109


>U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein.
          Length = 3460

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 539  YMGTECHPSVEGDA*IFDLRDPRNGLAKESDGTNGGGVCAPTNGVG 402
            Y GTECHP     + I    + +NG   +     GG +  P  G G
Sbjct: 1054 YQGTECHPEAALPSTIMSDFENQNGWESDWQEVIGGEIVKPEQGCG 1099


>AC006316-1|AAD29127.1| 2126|Homo sapiens unknown protein.
          Length = 2126

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 539 YMGTECHPSVEGDA*IFDLRDPRNGLAKESDGTNGGGVCAPTNGVG 402
           Y GTECHP     + I    + +NG   +     GG +  P  G G
Sbjct: 624 YQGTECHPEAALPSTIMSDFENQNGWESDWQEVIGGEIVKPEQGCG 669


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,513,465
Number of Sequences: 237096
Number of extensions: 2910000
Number of successful extensions: 18529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18529
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)