Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I08
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 58 1e-08
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 57 2e-08
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 50 2e-06
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 43 3e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 40 0.002
U41535-4|AAB63407.1| 655|Caenorhabditis elegans Hypothetical pr... 28 7.3
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 28 9.7
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 28 9.7
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 57.6 bits (133), Expect = 1e-08
Identities = 26/82 (31%), Positives = 47/82 (57%)
Frame = +2
Query: 122 LTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVAT 301
L GVPQGS +SP LF+ Y+ D+P +T L +ADD +I +K+ ++Q+ +
Sbjct: 529 LLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDE 588
Query: 302 LGQWFRKWRIDINPTKSAAVLF 367
+ ++ ++ + I+ KS +F
Sbjct: 589 IAKYLKERGMSISAEKSTVTVF 610
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 56.8 bits (131), Expect = 2e-08
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +2
Query: 125 TAGVPQGSALSPLLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVA 298
T GVPQG+ LSPLLF +Y+NDI +A FADDT +Y S K LQ A+
Sbjct: 74 TCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALD 132
Query: 299 TLGQWFRKWRIDINPTKSAAVLFKRGR 379
+ W + ++ +N +K+ V + R
Sbjct: 133 AVVDWTKGSKLTLNQSKTVHVTVGKRR 159
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/97 (26%), Positives = 48/97 (49%)
Frame = +3
Query: 453 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 632
L G PI + + LG + + F H + + A F L ++ + +K + +
Sbjct: 166 LDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---IL 222
Query: 633 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 743
LYKT IRP + Y +VV + ++ K+++ +Q+ F R
Sbjct: 223 LYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 10 KLYNMGVPDRLVLIIRDFLSNRSFRYRV 93
KL ++ L++ + +FLSNRSFR R+
Sbjct: 36 KLVSLRKNKNLLIWVNEFLSNRSFRVRI 63
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Frame = +2
Query: 41 SCSSYETSCRTVRFDIE*RELVLV-PXQLTAGVPQGSALSPLLFSLYIND--IPRSPETH 211
+CS Y+ F ++ + V +++GVPQGS PLLF L+IN+ I +P +
Sbjct: 849 TCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTIN 908
Query: 212 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSA 355
++ FADD I+++ +++ + I V+ W + + + PTKSA
Sbjct: 909 ISCFADDVKIFHT--DPTIIQNSIDIIVS----WSKLNELPLAPTKSA 950
Score = 35.5 bits (78), Expect = 0.048
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 459 GQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 638
G PI S V+ LG+ D + F HI V + + R +L + S S + LY
Sbjct: 967 GVPITPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLY 1023
Query: 639 KTCIRPVMTYASVVFA 686
KT + P+M Y S V+A
Sbjct: 1024 KTYVAPIMNYCSEVYA 1039
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/97 (27%), Positives = 48/97 (49%)
Frame = +3
Query: 453 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 632
L G PI + + LG + + F H K + A F L ++ + +K + +
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192
Query: 633 LYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 743
LYKT IRP + Y +VV + ++ K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Frame = +3
Query: 378 ALRTSLRA-SHSVSRRANTSAVSPITLF---GQPIPWVSKVKYLGVTLDRGMTFRPHIKT 545
A RT + +HS + + +P T++ PI + + LG+ D +TF+PHIK
Sbjct: 155 ASRTGVSTVAHSKTCLLHLGKKNPKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKK 214
Query: 546 VRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFAHAARTHLKSL 716
+ + L R +L S L L+KT I P++ Y S V++ + L +L
Sbjct: 215 I---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGSAVYSPKPSSSLSTL 268
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 122 LTAGVPQGSALSPLLFSLYINDIPRS--PETHLALFADDTAIY 244
+++GVP+GS P LF ++IN + S P + FADD +Y
Sbjct: 53 ISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVY 95
>U41535-4|AAB63407.1| 655|Caenorhabditis elegans Hypothetical
protein F18A1.5 protein.
Length = 655
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = -1
Query: 550 RTVFIWGRNVIPLSRVTPRYLTFETHGMGWPKRVM----GLTAEVFARLLTEWDARSDVR 383
RT R V+P++ VTP F+ HGM K + +VF +T D+ D
Sbjct: 214 RTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEEIRTFPAKNTKVFNFEIT--DSNGDTI 271
Query: 382 RATPFEE 362
R T F E
Sbjct: 272 RCTAFNE 278
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 2 TGINYTTWECQTDSCSSYETSCRTVRFDI 88
TG +Y C D C + SCR RFD+
Sbjct: 35 TGKHYGAMSC--DGCKAKRNSCRKCRFDV 61
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 2 TGINYTTWECQTDSCSSYETSCRTVRFDI 88
TG +Y C D C + SCR RFD+
Sbjct: 78 TGKHYGAMSC--DGCKAKRNSCRKCRFDV 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,491,120
Number of Sequences: 27780
Number of extensions: 435284
Number of successful extensions: 1265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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