Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I08
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31990.1 68414.m03934 expressed protein                             31   1.3  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    30   2.2  
At2g14000.1 68415.m01556 hypothetical protein                          28   6.9  
At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin ...    28   6.9  

>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 482 EGQISRRHPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL 595
           +  + + HP + D +P  Y+N  +  R+ + TTLS+ +
Sbjct: 48  QSHVGKAHPLKMDQMPRRYRNRRKTLRLATNTTLSSII 85


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
 Frame = +2

Query: 368 KRGRPPNITSSIPLR**ARKHLRR*SHHSLWPA--HSVGLEGQISRRHPRQRDDIPSPYK 541
           +R  PP  + S P R   R   R   ++S  PA  H         RR+ ++R    SP  
Sbjct: 138 RRRSPPRYSRSPPPRRGRRSRSRSRGYNSP-PAKRHQSRSVSPQDRRYEKERSYSRSPPH 196

Query: 542 NGTRPRRVYSRTTLSNAL*SKQTVPPQ*GNSLQNLHTPRHDVCKRSVRSRSPHPLEIPSG 721
           NG+R R        S++   +++V P+   S    +TP     +  V  +S  P  +P G
Sbjct: 197 NGSRVRSGSPGRVKSHSRSPRRSVSPRKNRS----YTPEQARSQSPVPRQSRSPTPVPRG 252


>At2g14000.1 68415.m01556 hypothetical protein
          Length = 346

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 484 FETHGMGWPKRVMGLTAEVFARLLTEWDARSDVRRATP 371
           F+THGMGW + +     +V+ +L+ E+ A   +  A P
Sbjct: 97  FQTHGMGWYREI---DEDVYPKLVKEFIATCRLTYANP 131


>At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin
           family protein similar to S glycoprotein [Brassica rapa]
           GI:2351186; contains Pfam profile PF01453: Lectin
           (probable mannose binding)
          Length = 455

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 176 TN*IITGRARSLAGLRRSVXRGRERVPSTRYRNERFDKKSRMMSTSLSGTPMLY 15
           T+ ++TG++  + G+ + V R  +   S    +   DKK   M  + +GTP++Y
Sbjct: 166 TDTLLTGQSLKVNGVNKLVSRTSDSNGSDGPYSMVLDKKGLTMYVNKTGTPLVY 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,534,918
Number of Sequences: 28952
Number of extensions: 408399
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)