Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I07
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
07_03_1747 + 29188568-29188715,29188793-29189541 29 3.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.6
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 6.3
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.3
08_02_0813 + 21459776-21461128 28 8.3
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.3
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 8.3
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 258 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 169
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 399 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSV 545
PPP TT++ V L TA + S + QF+C+ TTC + S S+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESL 258
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 430 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 281
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 311 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 490
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 491 MQLDHW 508
+ +++
Sbjct: 188 LDNNYY 193
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 243 VRVHRADTGRSSNELDRQTTELERRG 320
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 314 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 493
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 494 QL 499
+L
Sbjct: 289 EL 290
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 130 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 285
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 419 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 279
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 367 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 281
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 428 GRGERSPRRWLQPRLAVPRQASTSVPRTP 342
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,156,365
Number of Sequences: 37544
Number of extensions: 476674
Number of successful extensions: 1388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -