Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I07
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    32   0.56 
At4g01810.1 68417.m00238 protein transport protein-related relat...    30   1.7  
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr...    29   5.3  
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr...    29   5.3  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   7.0  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   7.0  

>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -3

Query: 224 LKCRVRLTTILESGGDSRSYVARSESIM-RDSDVAFSHSAALAIAQVRRNGNKNNISRRH 48
           + C++ +   LE+    +S ++R   ++  +SD +F  S A+ + +   NG+K ++ +  
Sbjct: 126 IPCQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDKIF 185

Query: 47  FMTTDLLKL 21
            +  + +KL
Sbjct: 186 KLVDENVKL 194


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 398 LQPRLAVPRQASTSVPRTPAKCCSPIPPAF 309
           L+P    P+   T VP +P    SPIPP F
Sbjct: 18  LEPNRPSPQPDRTPVPHSPPVVASPIPPRF 47


>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 352

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 190 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGGM 324
           S +VVN  +H+ H  +    STV++L  +++ W  K   W  G M
Sbjct: 210 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQGPM 250


>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 345

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 190 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGGM 324
           S +VVN  +H+ H  +    STV++L  +++ W  K   W  G M
Sbjct: 203 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQGPM 243


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 428 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 339
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 428 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 339
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,184
Number of Sequences: 28952
Number of extensions: 326573
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)