Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I06
         (931 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    33   0.43 
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    30   3.0  
02_05_0423 - 28834380-28835852,28836987-28837109                       29   4.0  

>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 364 HXRSRGHQPSXAAPFPCVPTSVVCRSNSFEDLPVSAPV 251
           H R R H+ S A P P  P  VV  + + E  PV APV
Sbjct: 31  HHRPRQHRRSSAQPPPLPPPPVVAAAAAAEAAPVMAPV 68


>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -2

Query: 318 PAFQPQSFVDPIHLKICQYPHRWTSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIM 139
           P  + Q F + + LK C+  HR   D   +  L   +RL T + S GD+ S     +  +
Sbjct: 548 PVQEAQKFAE-LSLKCCELRHRDRPDLESVV-LPELIRLHTFVASSGDNSSIDQGHQRSV 605

Query: 138 RDSDVAFSHSAA 103
            D ++A  +  A
Sbjct: 606 SDKELALENDLA 617


>02_05_0423 - 28834380-28835852,28836987-28837109
          Length = 531

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 249 STGADTGRSSNELDRQTTEVGTQGNGAAXLGWCPRERXWRPD 374
           +  AD G +    ++ T E     NGAA +G C  E    PD
Sbjct: 28  AAAADLGHADTGQEKPTVESAQPANGAAPMGECGTEYRGLPD 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,346
Number of Sequences: 37544
Number of extensions: 259737
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)