Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I06
         (931 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_30129| Best HMM Match : Y_phosphatase (HMM E-Value=6.7e-13)         29   7.1  

>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 241 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 137
           L+++S    +G VD  FGV  +   +R  +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628


>SB_30129| Best HMM Match : Y_phosphatase (HMM E-Value=6.7e-13)
          Length = 139

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 256 PVDLGLTNVSMSQMQGQVDYDFGVGGRLP-IVRCEERVDHEGQ*CCV 119
           P++ GL+   +  + GQV Y     GR P IV C   V   G  C V
Sbjct: 60  PLEDGLSRCQLIDLIGQVQYWQAESGRHPIIVHCSAGVGRTGVFCAV 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,672
Number of Sequences: 59808
Number of extensions: 277831
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)