Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I06
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    32   0.67 
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    30   2.1  

>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -2

Query: 444 RYXGPRRDVVTRRX*HXDXXQYTRQASTXVPEDTSQVXQ--PHSPAFQPQSFVDPIHLKI 271
           +Y  PRR  V R+    +  QY++Q     P  +SQV    P +P  QPQ  + P+ + +
Sbjct: 30  KYISPRRVEVMRQHIRPEISQYSQQQPP--PYYSSQVYPSVPSAPPIQPQPQMVPVSMPM 87

Query: 270 CQYPHRWTSDSRML 229
            Q  +     ++M+
Sbjct: 88  VQQQYMMPQMAQMM 101


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
            protein Y116A8C.36 protein.
          Length = 1097

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 340  PSXAAPFPCVPTSVVCRSNSFEDLPVSAPVDLGL 239
            P   AP P  P +V+C +    D   SAP  LG+
Sbjct: 959  PPTQAPTPAAPPTVLCEAKVVVDFVASAPNQLGI 992


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,374
Number of Sequences: 27780
Number of extensions: 204855
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)