Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I05
(899 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 43 3e-06
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 43 3e-06
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 41 2e-05
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 39 5e-05
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 39 5e-05
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 22 5.7
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 43.2 bits (97), Expect = 3e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +3
Query: 141 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSS 317
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 318 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 425
+LW+PDV++ N+A G + V +NGS ++
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYV 119
Score = 27.9 bits (59), Expect = 0.11
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
M + +P D Q C KFGS ++ +++D V++
Sbjct: 130 MDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 43.2 bits (97), Expect = 3e-06
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +3
Query: 141 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSS 317
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 318 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 425
+LW+PDV++ N+A G + V +NGS ++
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYV 119
Score = 27.1 bits (57), Expect = 0.20
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVID 550
+P D Q C KFGS ++ +++D V++
Sbjct: 135 FPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 40.7 bits (91), Expect = 2e-05
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 141 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSS 317
ES P ++ LTL + ++ E + A L + W D L WN E+ G ++
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82
Query: 318 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 425
+LW+PDV++ N+A G + V + GS ++
Sbjct: 83 NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYV 119
Score = 27.9 bits (59), Expect = 0.11
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
M + +P D Q C KFGS ++ +++D V++
Sbjct: 130 MDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 39.1 bits (87), Expect = 5e-05
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 240 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 414 VSWI 425
++
Sbjct: 116 CLYV 119
Score = 27.9 bits (59), Expect = 0.11
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
M + +P D Q C KFGS ++ +++D V++
Sbjct: 130 MDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 39.1 bits (87), Expect = 5e-05
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 240 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 414 VSWI 425
++
Sbjct: 116 CLYV 119
Score = 27.9 bits (59), Expect = 0.11
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
M + +P D Q C KFGS ++ +++D V++
Sbjct: 130 MDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 449 ISMQLDNWPND 481
+ M LDNW ND
Sbjct: 295 VEMALDNWKND 305
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,931
Number of Sequences: 336
Number of extensions: 3391
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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