Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I05
(899 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 9e-09
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 48 9e-08
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 48 2e-07
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 46 4e-07
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 46 5e-07
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 45 1e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 44 1e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 44 1e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 42 8e-06
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 36 7e-04
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 32 0.008
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 31 0.019
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 30 0.025
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 27 0.31
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.31
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 2.2
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 51.6 bits (118), Expect = 9e-09
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +3
Query: 63 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 221
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 222 VRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RAR 395
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 396 VSNNGSVSW 422
+ G V W
Sbjct: 127 LHYTGKVLW 135
Score = 25.8 bits (54), Expect = 0.54
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMD 538
+P D QTC KFGS ++ ++D
Sbjct: 152 FPFDQQTCFMKFGSWTYDGIQID 174
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 48.4 bits (110), Expect = 9e-08
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Frame = +3
Query: 48 SITCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIR 206
+I+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 4 AISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 63
Query: 207 ESESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYA 383
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y
Sbjct: 64 NQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYE 118
Query: 384 L----RARVSNNGSVSW 422
+ +A + + G V W
Sbjct: 119 VTIMTKAILHHTGKVVW 135
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ ++ +P D QTC KFGS ++ +D
Sbjct: 147 IDVEYFPFDEQTCFMKFGSWTYDGYTVD 174
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 47.6 bits (108), Expect = 2e-07
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Frame = +3
Query: 30 ILVTXFSITCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLT--LHLRHANI 203
+L I ++A E + D LL+ Y+R P LT L L+ + +
Sbjct: 11 VLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQL 70
Query: 204 RESESTVRILAD---LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA 371
E +++ ++ W D +L WN E+G L V SE +W PD+VL N A
Sbjct: 71 IEMNLKNQVMTTNVWVEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---D 127
Query: 372 GDYAL----RARVSNNGSVSW 422
G+Y + +A + G VSW
Sbjct: 128 GNYEVTLMTKATLKYTGDVSW 148
Score = 27.1 bits (57), Expect = 0.23
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ ++ +P D Q+C KFGS +N ++D
Sbjct: 160 INVEYFPFDEQSCIMKFGSWTYNGAQVD 187
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = +3
Query: 108 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 272
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 273 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 425
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI 547
+P D Q C KFGS ++ +++D V+
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = +3
Query: 108 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 272
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 273 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 425
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI 547
+P D Q C KFGS ++ +++D V+
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 47.2 bits (107), Expect = 2e-07
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +3
Query: 81 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 239
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 240 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 413
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 414 VSW 422
V W
Sbjct: 137 VEW 139
Score = 26.6 bits (56), Expect = 0.31
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ ++ +P D QTC KFGS ++ ++D
Sbjct: 151 IDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 46.4 bits (105), Expect = 4e-07
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 371
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 372 GDYALRARVSNNGSVSWI 425
G Y V++NGS ++
Sbjct: 85 GTYQTSVVVTHNGSCLYV 102
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI 547
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 46.0 bits (104), Expect = 5e-07
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Frame = +3
Query: 108 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 272
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 273 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
W E+G L V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
+ ++ +P D QTC KFGS ++ ++D
Sbjct: 155 IDVEYFPFDEQTCVLKFGSWTYDGFKVD 182
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +3
Query: 162 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPD 338
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 339 VVLLNAAATTAGDYALRAR--VSNNGSVSWIS 428
+L N A + VS+ G V W+S
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLS 123
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 371
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 372 GDYALRARVSNNGSVSWI 425
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI 547
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 371
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 372 GDYALRARVSNNGSVSWI 425
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI 547
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 371
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 372 GDYALRARVSNNGSVSWI 425
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI 547
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 371
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 372 GDYALRARVSNNGSVSWI 425
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 26.2 bits (55), Expect = 0.41
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI 547
+P D Q C KFGS ++ +++D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 198 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 371
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 372 GDYALRARVSNNGSVSWI 425
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 26.6 bits (56), Expect = 0.31
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 547
M + +P D Q C KFGS ++ +++D V+
Sbjct: 113 MDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +3
Query: 81 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 245
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 246 MNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVL 347
+ W L W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
Score = 26.6 bits (56), Expect = 0.31
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEM---DFVIDKRIYXMFESGT-WDVTDLS 604
WP D+ CT S H S+E+ ++ + M+ + T W++ +S
Sbjct: 166 WPYDILNCTIHIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMS 214
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 44.4 bits (100), Expect = 1e-06
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Frame = +3
Query: 60 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 224
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 225 RILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARV 398
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 399 SNNGSVSWI 425
NNG+ ++
Sbjct: 131 KNNGTCLYV 139
Score = 25.4 bits (53), Expect = 0.71
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVIDKR----IYXMFESGTWDV 592
+P D Q C KFGS ++ ++D + I +G WD+
Sbjct: 155 FPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDL 199
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 43.2 bits (97), Expect = 3e-06
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Frame = +3
Query: 108 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 272
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 273 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 26.6 bits (56), Expect = 0.31
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 452 SMQLDNWPNDMQTCTFKFGSRMHNSDEMD 538
S+ ++ +P D+QTC K GS ++ ++D
Sbjct: 154 SIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 42.7 bits (96), Expect = 4e-06
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Frame = +3
Query: 159 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWR 332
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 333 PDVVLLNAAATTAGDYALRAR----VSNNGSVSWI 425
PD+VL N A G+Y +R + + NG V W+
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
Score = 35.5 bits (78), Expect = 7e-04
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVI--DKRIYXM---FESGTWDVTDL 601
+P D QTC KFGS N D++ + +K + ++SGTWD+ ++
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINV 206
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 41.9 bits (94), Expect = 8e-06
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 254
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 255 IDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLN 353
+D+RL + G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 27.1 bits (57), Expect = 0.23
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGS 511
M L+N+P D Q C +FGS
Sbjct: 132 MNLENFPMDTQRCPLQFGS 150
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 35.5 bits (78), Expect = 7e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 467 NWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYXM 568
+WP D C FGS +H+ +E++ +DK+ + M
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.9 bits (69), Expect = 0.008
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 254
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 255 IDKRLXWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 407
D RL + G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 408 GSVS 419
GS++
Sbjct: 124 GSIT 127
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.019
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Frame = +3
Query: 87 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 254
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 255 IDKRLXWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 407
D RL + G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 408 GSVS 419
GS++
Sbjct: 124 GSIT 127
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 30.3 bits (65), Expect = 0.025
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +3
Query: 96 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 260
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 261 KRLXWNAGEWGCSTWLVSSERLWRPDVVLLN 353
RL + S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Score = 23.4 bits (48), Expect = 2.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 437 ISTPISMQLDNWPNDMQTCTFKFGS 511
I M+L N+P D Q+C GS
Sbjct: 158 IKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 26.6 bits (56), Expect = 0.31
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +2
Query: 452 SMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 544
+M+ +++P+D Q C+ S H + ++ F+
Sbjct: 133 AMKFESYPHDTQICSMMIESLSHTTQDLVFI 163
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 26.6 bits (56), Expect = 0.31
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 470 WPNDMQTCTFKFGSRMHNSDEMDFVID 550
+P+D Q C + S H +DEM F D
Sbjct: 170 YPHDTQECKLQMESLSHTTDEMIFQWD 196
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.8 bits (49), Expect = 2.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 455 MQLDNWPNDMQTCTFKFGSRMHNSDEM 535
++L+ +P D+Q C F S HN +M
Sbjct: 144 LRLEKFPFDVQECPLIFESWTHNVLDM 170
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,981
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 71
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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