Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I04
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 371 e-103
03_01_0547 + 4093196-4093657,4094267-4095148 371 e-103
03_01_0544 + 4082528-4082989,4083585-4084466 371 e-103
03_01_0543 + 4076981-4077442,4078145-4079026 371 e-103
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 204 5e-53
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 204 5e-53
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 174 8e-44
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 164 9e-41
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 134 6e-32
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 100 1e-21
02_04_0462 + 23131433-23132836 99 2e-21
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 59 5e-09
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 55 6e-08
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 51 1e-06
02_04_0148 - 20198407-20201424 49 4e-06
03_05_0511 + 25056018-25059107 49 5e-06
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 48 7e-06
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 45 9e-05
04_01_0103 + 1082077-1082167,1083037-1085477 43 4e-04
02_04_0017 + 18937774-18937864,18938505-18940945 43 4e-04
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 41 0.001
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 39 0.004
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 39 0.006
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 39 0.006
01_06_0662 + 30987187-30987277,30987825-30990214 38 0.008
09_04_0730 + 19783346-19783372,19783548-19783638,19783973-197840... 35 0.013
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 27 0.64
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 30 2.0
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 30 2.7
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 29 3.5
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 3.5
01_01_0016 - 88825-90411 29 4.6
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830... 29 6.1
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323... 29 6.1
05_04_0116 + 18131510-18133192 29 6.1
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 28 8.1
03_04_0206 - 18493178-18495310 28 8.1
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 371 bits (913), Expect = e-103
Identities = 172/213 (80%), Positives = 190/213 (89%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 428
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK 180
Query: 609 IGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKG 707
+GYNP + FVPISG+ GDNM+E ST + W+KG
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG 213
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 371 bits (913), Expect = e-103
Identities = 172/213 (80%), Positives = 190/213 (89%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 428
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK 180
Query: 609 IGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKG 707
+GYNP + FVPISG+ GDNM+E ST + W+KG
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG 213
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 371 bits (913), Expect = e-103
Identities = 172/213 (80%), Positives = 190/213 (89%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 428
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK 180
Query: 609 IGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKG 707
+GYNP + FVPISG+ GDNM+E ST + W+KG
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG 213
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 371 bits (913), Expect = e-103
Identities = 172/213 (80%), Positives = 190/213 (89%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 428
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KEVSSY+KK
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK 180
Query: 609 IGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKG 707
+GYNP + FVPISG+ GDNM+E ST + W+KG
Sbjct: 181 VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG 213
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 204 bits (499), Expect = 5e-53
Identities = 99/217 (45%), Positives = 147/217 (67%), Gaps = 8/217 (3%)
Frame = +3
Query: 84 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 263
+ +N+ ++GHVDSGKST +G L++ G I K+ + K EKEA+E GKGSF YAW +D+
Sbjct: 246 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSE 305
Query: 264 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 443
ERERG+T+ +A+ ET KY V ++D+PGH+DF+ NMI+G +QAD A+L+V A TG FEA
Sbjct: 306 ERERGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACTGSFEA 365
Query: 444 GISKN-----GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
G+ GQT+EHA L + GV+QLIV VNKMD+ YS+ RFE IK ++ S+++
Sbjct: 366 GMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNKMDAI--GYSKERFEFIKVQLGSFLRS 423
Query: 609 IGYNPXAVAFVPISGWHGDNMLE-PS--TKMPWFKGW 710
+ +V ++P+S N+++ PS W++G+
Sbjct: 424 CNFKDSSVTWIPLSAVENQNLIKIPSDVRLTSWYQGF 460
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 204 bits (499), Expect = 5e-53
Identities = 99/217 (45%), Positives = 147/217 (67%), Gaps = 8/217 (3%)
Frame = +3
Query: 84 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 263
+ +N+ ++GHVDSGKST +G L++ G I K+ + K EKEA+E GKGSF YAW +D+
Sbjct: 246 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSE 305
Query: 264 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 443
ERERG+T+ +A+ ET KY V ++D+PGH+DF+ NMI+G +QAD A+L+V A TG FEA
Sbjct: 306 ERERGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACTGSFEA 365
Query: 444 GISKN-----GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
G+ GQT+EHA L + GV+QLIV VNKMD+ YS+ RFE IK ++ S+++
Sbjct: 366 GMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNKMDAI--GYSKERFEFIKVQLGSFLRS 423
Query: 609 IGYNPXAVAFVPISGWHGDNMLE-PS--TKMPWFKGW 710
+ +V ++P+S N+++ PS W++G+
Sbjct: 424 CNFKDSSVTWIPLSAVENQNLIKIPSDVRLTSWYQGF 460
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 174 bits (423), Expect = 8e-44
Identities = 86/190 (45%), Positives = 126/190 (66%), Gaps = 5/190 (2%)
Frame = +3
Query: 117 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA 296
D+GKST G +++ G +D RTI+K+EKEA++ + S+ A+++D + ER +G T+++
Sbjct: 4 DAGKSTAGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERLKGKTVEVG 63
Query: 297 LWKFETSKYYVTIIDAP----GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 464
FET TI+DAP GH+ ++ NMI+G SQAD VL+++A GEFE G K GQ
Sbjct: 64 RAHFETETTRFTILDAPVKMKGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQ 123
Query: 465 TREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN-PXAVAFV 641
TREH LLA TLGV +LIV +NKMD +S+ R++EI+ ++ +++ GYN V F+
Sbjct: 124 TREHVLLAKTLGVAKLIVVINKMDEPTVKWSKERYDEIESKMVPFLRSSGYNVKKDVHFL 183
Query: 642 PISGWHGDNM 671
PISG G NM
Sbjct: 184 PISGLLGSNM 193
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 164 bits (398), Expect = 9e-41
Identities = 78/170 (45%), Positives = 116/170 (68%), Gaps = 5/170 (2%)
Frame = +3
Query: 213 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 392
+GKGSF YAW +D+ ERERGIT+ + + F+T Y+V ++D+PGH+DF+ NMI+G +Q
Sbjct: 276 IGKGSFAYAWAMDESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQ 335
Query: 393 ADCAVLIVAAGTGEFEAGISKN--GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPR 566
+D A+L++ A G FEAG+ N GQT+EH+ L + GV LIV VNKMDS E YS+ R
Sbjct: 336 SDAAILVIDASIGSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVE--YSKER 393
Query: 567 FEEIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPS--TKM-PWFKG 707
F IK ++ ++++ GY AVA+VPIS +N++ + T++ W+ G
Sbjct: 394 FNFIKSQLGAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDG 443
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 134 bits (325), Expect = 6e-32
Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 3/148 (2%)
Frame = +3
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 452
+G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G
Sbjct: 15 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYE 74
Query: 453 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYN-PXA 629
+ GQTREH LLA TLGV +L+V +NKMD + +S+ R++EI+ ++ ++K GYN
Sbjct: 75 RGGQTREHVLLAKTLGVSKLVVVINKMDESTVGWSKERYDEIEGKMVPFLKSSGYNVKKD 134
Query: 630 VAFVPISGWHGDNMLEPSTK--MPWFKG 707
V F+PISG G NM K W+ G
Sbjct: 135 VHFLPISGLLGTNMKTRMDKSNCSWWSG 162
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 100 bits (240), Expect = 1e-21
Identities = 67/198 (33%), Positives = 97/198 (48%)
Frame = +3
Query: 75 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 254
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RTKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEAGKAKAVAFDEIDK 107
Query: 255 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 434
E+ RGITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+A G
Sbjct: 108 APEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP 167
Query: 435 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 614
QT+EH LLA +GV L+ +NK+D+ + P E +E+ S+ K G
Sbjct: 168 MP-------QTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPG 220
Query: 615 YNPXAVAFVPISGWHGDN 668
+ +S G N
Sbjct: 221 DEIPIIRGSALSALQGTN 238
>02_04_0462 + 23131433-23132836
Length = 467
Score = 99 bits (238), Expect = 2e-21
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 1/179 (0%)
Frame = +3
Query: 66 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 245
K + K H+NI IGHVD GK+T T L + +K+++
Sbjct: 63 KFERTKPHVNIGTIGHVDHGKTTLTAALTMVLASVGGSAPKKYDE--------------- 107
Query: 246 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 425
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+
Sbjct: 108 IDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 167
Query: 426 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE-EIKKEVSSY 599
G QT+EH LLA +GV +++V +NK D + E E+++ +SSY
Sbjct: 168 DGPMP-------QTKEHILLAKQVGVPKIVVFLNKKDQVDDEELLQLVELEVRELLSSY 219
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 58.8 bits (136), Expect = 5e-09
Identities = 42/130 (32%), Positives = 63/130 (48%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
NI + H+DSGK+T T ++Y G I E E ++ G G+ +D + ERE
Sbjct: 70 NIGISAHIDSGKTTLTERVLYYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 119
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 452
+GITI A + Y V IID PGH DF + D A+L++ + G I+
Sbjct: 120 KGITIQSAATYCTWNGYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 179
Query: 453 KNGQTREHAL 482
+ Q R + +
Sbjct: 180 VDRQMRRYEI 189
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 55.2 bits (127), Expect = 6e-08
Identities = 47/174 (27%), Positives = 73/174 (41%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N+ VI HVD GK+T L+ +CG + +D + ERE
Sbjct: 66 NVAVIAHVDHGKTTLMDRLLRQCGA-------------------DIPHERAMDSISLERE 106
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 452
RGITI + + + ++D PGH DF + + AVL+V AG G
Sbjct: 107 RGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPL----- 161
Query: 453 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 614
QT+ A G++ +++ +NK+D P SE E++ V +G
Sbjct: 162 --AQTKFVLSKALKYGLRPILL-LNKVD--RPSVSEETCNEVESLVFDLFANLG 210
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 51.2 bits (117), Expect = 1e-06
Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N +I H+D GKST L+ G + KR EM K F LD + ERE
Sbjct: 79 NFSIIAHIDHGKSTLADKLLELTGTVQKR----------EM-KQQF-----LDNMDLERE 122
Query: 273 RGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 440
RGITI + + Y + +ID PGH DF + + + A+L+V A G E
Sbjct: 123 RGITIKLQAARMRYIMNDEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VE 181
Query: 441 AGISKNGQTREHALLAFTLGVKQLIVGVNKMD--STEPPYSEPRFEEI 578
A QT + LA + ++I +NK+D EP EEI
Sbjct: 182 A------QTLANVYLALENDL-EIIPVLNKIDLPGAEPDRVAQEIEEI 222
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 49.2 bits (112), Expect = 4e-06
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N ++ HVD GK++ HLI G E+ E GS A V+D L+ E+
Sbjct: 18 NTCILAHVDHGKTSLADHLIAAYGS---------ERRVSERMAGS---ARVMDHLEEEQR 65
Query: 273 RGITI---DIALWKF--ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 431
R IT+ IAL + + + V +ID+PGH DF + AD A+++V A G
Sbjct: 66 RAITMKSASIALRRGGEDGGGHRVHLIDSPGHIDFCSEVSAAARLADSALVLVDAAEG 123
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 48.8 bits (111), Expect = 5e-06
Identities = 32/113 (28%), Positives = 51/113 (45%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N ++ HVD GK+T HL+ CG + G ++ +D L E+
Sbjct: 12 NTCILAHVDHGKTTLADHLVASCG----------DGLVHPRLAGRLRF---MDYLDEEQR 58
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 431
R IT+ A + V +ID+PGH DF + + +D A+++V A G
Sbjct: 59 RAITMKSAAVVLHHGGHRVNLIDSPGHIDFCSEVSSAARLSDSALILVDAVEG 111
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 48.4 bits (110), Expect = 7e-06
Identities = 35/110 (31%), Positives = 57/110 (51%)
Frame = +3
Query: 87 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 266
HI+ V++ H+D+GK+TTT ++Y G K I +F+ +G+ W ++ E
Sbjct: 105 HIS-VIMAHIDAGKTTTTERVLYYTGRNYK--IGEFQ-------EGTVTMDW----MEQE 150
Query: 267 RERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 416
+ERGITI +K+ + IID PGH DF + D A++ +
Sbjct: 151 QERGITITSPPTTAFWNKHRINIIDTPGHVDFTLEVERALRVLDGAIMSI 200
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 44.8 bits (101), Expect = 9e-05
Identities = 50/163 (30%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N +I HVD GKST L+ G I K G G +Y LDKL+ ERE
Sbjct: 59 NFSIIAHVDHGKSTLADRLLELTGTIKK-------------GHGQPQY---LDKLQVERE 102
Query: 273 RGITIDI---------------ALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAV 407
RGIT+ A + + Y + +ID PGH DF + + A+
Sbjct: 103 RGITVKAQTATMFYRHANNQLPASDQPDAPSYLLNLIDTPGHVDFSYEVSRSLAACQGAL 162
Query: 408 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 536
L+V A G QT + LAF + +I +NK+D
Sbjct: 163 LVVDAAQG-------VQAQTIANFYLAFESNL-SIIPVINKID 197
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 42.7 bits (96), Expect = 4e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKY 236
M K+ N+ VI HVD GKST T L+ G I + + + A E +G + K
Sbjct: 13 MDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKS 72
Query: 237 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 416
+ + E ++ + + + ++Y + +ID+PGH DF + D A+++V
Sbjct: 73 TGISLFYEMSDE---SLKLYKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 42.7 bits (96), Expect = 4e-04
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKY 236
M K+ N+ VI HVD GKST T L+ G I + + + A E +G + K
Sbjct: 13 MDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKS 72
Query: 237 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 416
+ + E ++ + + + ++Y + +ID+PGH DF + D A+++V
Sbjct: 73 TGISLFYEMSDE---SLKLYKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 41.1 bits (92), Expect = 0.001
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKY 236
M K+ N+ VI HVD GKST T L+ G I + + + A E +G + K
Sbjct: 13 MDKKDNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQDVAGDVRMTDTRADEAERGITIKS 72
Query: 237 AWVLDKLKAERERGITIDIALWKFETSK----YYVTIIDAPGHRDFIKNMITGTSQADCA 404
+ L E D AL FE + Y + +ID+PGH DF + D A
Sbjct: 73 TGI--SLYYE-----MTDAALRSFEGKRDGNSYLINLIDSPGHIDFSSEVTAALRITDGA 125
Query: 405 VLIV 416
+++V
Sbjct: 126 LVVV 129
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 39.1 bits (87), Expect = 0.004
Identities = 28/113 (24%), Positives = 49/113 (43%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N+ ++GH+ GK+ L+ + +D F+ E + + F V ++ +
Sbjct: 150 NVALVGHLQHGKTVFMDMLVEQTHEVDT-----FDSEGERHVR--FTDTRVDEQERRVSI 202
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 431
+ + + + L Y I+D PGH +F M AD AVL+V A G
Sbjct: 203 KAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAALRIADGAVLVVDAAEG 255
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 38.7 bits (86), Expect = 0.006
Identities = 24/93 (25%), Positives = 44/93 (47%)
Frame = +3
Query: 324 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 503
+V+ +D PGH + M+ G + D A+L++AA QT EH + +
Sbjct: 149 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANES------CPQPQTSEHLAAVEIMRL 202
Query: 504 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 602
+ +I+ NK+D + + + E I+K + I
Sbjct: 203 QHIIILQNKIDLIQEGAAMNQHEAIQKFIQGTI 235
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 38.7 bits (86), Expect = 0.006
Identities = 43/159 (27%), Positives = 65/159 (40%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
NI ++ HVD GK+T ++ + + + + QE ++D ERE
Sbjct: 121 NIAIVAHVDHGKTTLVDSMLRQA------KVFRDNQVVQER---------IMDSNDLERE 165
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 452
RGITI + IID PGH DF + + + +L+V + G
Sbjct: 166 RGITILSKNTSITYKGTKINIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMP---- 221
Query: 453 KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 569
QTR A G ++V VNK+D P + P F
Sbjct: 222 ---QTRFVLKKALEFG-HAVVVVVNKIDR---PTARPEF 253
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 38.3 bits (85), Expect = 0.008
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKY 236
M K+ N+ V+ HVD GKST T L+ G I + + + + E +G + K
Sbjct: 13 MDKKHNIRNMSVVAHVDHGKSTLTDSLVAAAGIIAQDVAGDVRMTDSRSDEAERGITIKS 72
Query: 237 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 416
+ + E ++ + ++Y + +ID+PGH DF + D A+++V
Sbjct: 73 TGISLYYEMSDE---SLKSYKGDRDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>09_04_0730 +
19783346-19783372,19783548-19783638,19783973-19784051,
19784410-19784743,19784934-19785968,19786141-19786290,
19786781-19787215
Length = 716
Score = 35.1 bits (77), Expect(2) = 0.013
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +3
Query: 216 GKGSFKYAWVLDKLKAERERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQ 392
GK S + + A+ GIT I + E S +T +D PGH F G +
Sbjct: 209 GKTSLLDSLRQTSVAAKEAGGITQHIGAFVVEMPSGASITFLDTPGHAAFSAMRARGAAV 268
Query: 393 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 542
D VL+VAA G + + HA A ++V VNK D +
Sbjct: 269 TDIVVLVVAADDGVMPQTL----EAMSHAKAANV----PIVVAVNKCDKS 310
Score = 21.4 bits (43), Expect(2) = 0.013
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +3
Query: 96 IVVIGHVDSGKST 134
+ ++GHVD GK++
Sbjct: 200 VTIMGHVDHGKTS 212
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 27.1 bits (57), Expect(2) = 0.64
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Frame = +3
Query: 252 KLKAERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 419
K+ A GIT I ++ + + + +D PGH F G D +++V+
Sbjct: 451 KVVASEAGGITQGIGAYQVIVQVDGNPHACVFLDTPGHEAFGAMRARGARVTDICIIVVS 510
Query: 420 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 533
A G QT E A GV +++ +NK+
Sbjct: 511 ADDG-------VRPQTNEAIAHAKAAGV-PIVIAINKV 540
Score = 23.4 bits (48), Expect(2) = 0.64
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 96 IVVIGHVDSGKSTTTGHL 149
+ ++GHVD GK+T ++
Sbjct: 430 VTIMGHVDHGKTTLLDYI 447
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 333 IIDAPGHRDFIKNMITGTSQADCAVLIV 416
+ID PGH+ F G+S D A+L+V
Sbjct: 489 VIDTPGHQSFSNLRTRGSSLCDIAILVV 516
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 333 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 512
+ID PGH F G S D AV++V + G+ K QT E L V+ +
Sbjct: 507 VIDTPGHESFSNMRSRGMSLCDIAVVVV-----DIMHGLEK--QTVETLALLKDRNVRFI 559
Query: 513 IVGVNKMD 536
+V +NK+D
Sbjct: 560 VV-LNKVD 566
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 333 IIDAPGHRDFIKNMITGTSQADCAVLIV 416
+ID PGH F G+S D A+L+V
Sbjct: 766 VIDTPGHESFSNLRSRGSSLCDIAILVV 793
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +3
Query: 531 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPXAV------AFVPISGWHGDNMLEPSTK 689
M STEP + + + EV IKK+GYN + A+ G+H N PS++
Sbjct: 322 MSSTEPKINT--YANFRDEVLPRIKKLGYNAVQIMAIQEHAYYGSFGYHVTNFFAPSSR 378
>01_01_0016 - 88825-90411
Length = 528
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 518 YDELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSA 399
YD F + +G+L L+V+ F+ TGT + D+H A
Sbjct: 241 YDAAF--RDHARRGLLPALSVIEPRYFDLTGTPADDDHPA 278
>09_04_0232 -
15882589-15882720,15882799-15882889,15882987-15883087,
15883494-15883592,15883693-15883830,15883918-15884508,
15884819-15884989,15885068-15885203,15885561-15885592,
15886280-15886336,15886434-15886686,15886762-15886850,
15887181-15887234,15887498-15887689,15887777-15887938
Length = 765
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 608 DWLQPXCCRFRAHFWMARRQHVGAFNQNALVQGM 709
DW+ C AHF RRQ +G F A G+
Sbjct: 697 DWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGL 730
>08_02_0869 -
22031889-22032017,22032114-22032204,22032289-22032389,
22033262-22033303,22033393-22033491,22033616-22033753,
22033853-22034428,22034897-22035070,22035155-22035290,
22035694-22035725,22036873-22037125,22037216-22037304,
22037771-22037824,22038801-22038992,22039065-22039229
Length = 756
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 608 DWLQPXCCRFRAHFWMARRQHVGAFNQNALVQGM 709
DW+ C AHF RRQ +G F A G+
Sbjct: 689 DWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGL 722
>05_04_0116 + 18131510-18133192
Length = 560
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -2
Query: 574 SSNLGSLYGGSVE-SILFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPA---ATMS 407
+S G GGS+ S+ P S T V S P + PA+ +P PA ATM+
Sbjct: 66 ASGSGEGQGGSMSLSLQLRPLGSTPTAAVAVSVPPMAAAPMMAGPAAAAPAPAPPLATMA 125
Query: 406 TAQSA 392
AQ+A
Sbjct: 126 VAQNA 130
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 584 LLDFLKSGLTVWWFSGIHFVY 522
+L+ GL VW GIHFVY
Sbjct: 234 ILEIKTGGLVVWTRGGIHFVY 254
>03_04_0206 - 18493178-18495310
Length = 710
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 522 VNKMDSTEPPYSEPRFEEIKKEV 590
VNK D T Y + EEIKKEV
Sbjct: 686 VNKFDGTFEDYKDELLEEIKKEV 708
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,994
Number of Sequences: 37544
Number of extensions: 425528
Number of successful extensions: 1136
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -