Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I02
(851 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 306 1e-83
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 297 4e-81
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 297 4e-81
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 31 0.97
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote... 30 1.7
At1g29195.1 68414.m03572 expressed protein 30 1.7
At1g28050.1 68414.m03434 zinc finger (B-box type) family protein 29 3.9
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 28 6.9
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 306 bits (752), Expect = 1e-83
Identities = 142/255 (55%), Positives = 183/255 (71%), Gaps = 1/255 (0%)
Frame = +3
Query: 33 MSHRKFSVPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
++PGSK++KKE EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 393 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 569
NW + E G+K I+ +KM +YCSV+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 570 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKK 749
+ EIQ+NGG I KV +A EK +PVD++F +DEMID I +RW +
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 750 LPVRHTRVLGKLPAL 794
LP + R L K+ +
Sbjct: 241 LPRKTHRGLRKVACI 255
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 755 RKTHKGLRKVACIGXWHPSRVSSTVXRAGQ 844
RKTH+GLRKVACIG WHP+RVS TV RAGQ
Sbjct: 243 RKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 297 bits (730), Expect = 4e-81
Identities = 140/255 (54%), Positives = 180/255 (70%), Gaps = 1/255 (0%)
Frame = +3
Query: 33 MSHRKFSVPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 393 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 569
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 570 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKK 749
+MEIQ+NGGTI KV +A EK IP+++VF +DEMID I +RW +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 750 LPVRHTRVLGKLPAL 794
LP + R L K+ +
Sbjct: 241 LPRKTHRGLRKVACI 255
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 755 RKTHKGLRKVACIGXWHPSRVSSTVXRAGQ 844
RKTH+GLRKVACIG WHP+RVS TV RAGQ
Sbjct: 243 RKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 297 bits (730), Expect = 4e-81
Identities = 140/255 (54%), Positives = 180/255 (70%), Gaps = 1/255 (0%)
Frame = +3
Query: 33 MSHRKFSVPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 393 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 569
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 570 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKK 749
+MEIQ+NGGTI KV +A EK IP+++VF +DEMID I +RW +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 750 LPVRHTRVLGKLPAL 794
LP + R L K+ +
Sbjct: 241 LPRKTHRGLRKVACI 255
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 755 RKTHKGLRKVACIGXWHPSRVSSTVXRAGQ 844
RKTH+GLRKVACIG WHP+RVS TV RAGQ
Sbjct: 243 RKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -1
Query: 392 FVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 213
F T T R+ P A ++ ++N + T+ + L G++L+ LFL+ F
Sbjct: 46 FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103
Query: 212 RFSNHVGHTGLITD 171
+ H G+ ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117
>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 382
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 671 LGKHRIDRDRFLQMFSGPFHFVLDGTT 591
L KH + +D+ L+++ G +H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 159 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 281
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At1g28050.1 68414.m03434 zinc finger (B-box type) family protein
Length = 433
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 841 TSTXYSGRHPRRMPXSNAGNFPKTLVCLTGSFFVCQ 734
T+ S +H R N GN P ++ C T + +CQ
Sbjct: 38 TANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQ 73
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 530 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPCRFC 661
S + K A +EGS G +G E G+ SG+ Y CRFC
Sbjct: 18 SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,338,715
Number of Sequences: 28952
Number of extensions: 416538
Number of successful extensions: 1061
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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