Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H24
(905 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 300 4e-80
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru... 91 5e-17
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ... 83 1e-14
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 75 3e-12
UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat... 71 3e-11
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 63 1e-08
UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent viru... 60 6e-08
UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow... 59 1e-07
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 56 1e-06
UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosai... 56 2e-06
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 54 4e-06
UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Vir... 54 4e-06
UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 54 4e-06
UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosa... 51 4e-05
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 45 0.002
UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass etched... 44 0.007
UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 43 0.009
UniRef50_UPI0000DBFFDF Cluster: UPI0000DBFFDF related cluster; n... 38 0.47
UniRef50_A1A5Z7 Cluster: Zgc:158441; n=7; Deuterostomia|Rep: Zgc... 37 0.81
UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 37 0.81
UniRef50_Q5JJ70 Cluster: Hypothetical membrane protein, conserve... 36 1.9
UniRef50_A3VLC7 Cluster: Transcriptional regulator, MerR family ... 34 4.3
UniRef50_A5DFG8 Cluster: Putative uncharacterized protein; n=1; ... 33 7.6
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 300 bits (736), Expect = 4e-80
Identities = 158/214 (73%), Positives = 163/214 (76%)
Frame = +3
Query: 18 MEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQXXXXXXXXXXXXXXXXXXX 197
MEEIVPL VSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQ
Sbjct: 1 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSSDSVVLSSQPLPPAP 60
Query: 198 XXXXXXXXXXXXQRLVIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE 377
QRL+IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE
Sbjct: 61 PPPLGSSLGRSPQRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE 120
Query: 378 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGY 557
AVVFPSAPSLKIPVTVDLCWTTADVTVEG NVLATPSS+RIT+GGLALMHQATLPCDLGY
Sbjct: 121 AVVFPSAPSLKIPVTVDLCWTTADVTVEGFNVLATPSSARITMGGLALMHQATLPCDLGY 180
Query: 558 INPIIKIPDSIHQPPQTLTSXSINPLXAVLKXVR 659
INPIIK P P+ L AVL+ VR
Sbjct: 181 INPIIKSPIPYTNHPR-LNIHFHQSADAVLEGVR 213
>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
virus|Rep: Coat protein - Grapevine fleck virus
Length = 230
Score = 90.6 bits (215), Expect = 5e-17
Identities = 45/110 (40%), Positives = 64/110 (58%)
Frame = +3
Query: 246 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 425
+PFQ L++D+TGTE+ S+++ S P V ++ + YR A L +LEA V P+A S P TV
Sbjct: 68 LPFQFLWYDITGTESSYTSLSIASRPEVVTVARPYRHARLTSLEAFVQPTASSATYPQTV 127
Query: 426 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIK 575
DLCWT VT +L+ + RI G + LP +L +NP IK
Sbjct: 128 DLCWTIDSVTPARSEILSVFGAQRIAWGSVHFSAPILLPAELSSLNPTIK 177
>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
Globe virus|Rep: 25kDa coat protein - Grapevine Red
Globe virus
Length = 235
Score = 82.6 bits (195), Expect = 1e-14
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Frame = +3
Query: 246 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 425
+PFQ +++DLT ET S+ + S P S+ Y A L +LE VFP PS P++
Sbjct: 71 LPFQFIFYDLTNAETGFTSLDLASKPPFLSLTSPYAYAVLQSLELTVFPKNPSYTYPMSF 130
Query: 426 DLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKIPDSIHQPP 602
D W ++ V++ G +L+T +R+T GG + + LP DL NP++K S + P
Sbjct: 131 DAHWHSSSVSITGSQILSTYGGTRVTFGGPITSSNPIILPADLRSTNPVVKDTVSYNNTP 190
Query: 603 Q 605
+
Sbjct: 191 K 191
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 74.9 bits (176), Expect = 3e-12
Identities = 43/129 (33%), Positives = 67/129 (51%)
Frame = +3
Query: 246 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 425
+PFQ + D+ + + + ++S I YR A L L+A+V P+A S + P+T+
Sbjct: 1820 VPFQTVAMDVVAAGGNA-TFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPITL 1878
Query: 426 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKIPDSIHQPPQ 605
DL W+T +V + +L +R IGG L H L DL Y+NP+IK S P+
Sbjct: 1879 DLVWSTNNVIFTDLQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDSVSYVDTPK 1938
Query: 606 TLTSXSINP 632
LT + +P
Sbjct: 1939 -LTLNASDP 1946
>UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat
protein - Ononis yellow mosaic virus
Length = 192
Score = 71.3 bits (167), Expect = 3e-11
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Frame = +3
Query: 240 LVIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 419
+V+PFQ DL G S +T+ S P ++ + YR A +V EAV+FP++ S K PV
Sbjct: 32 MVVPFQVSVSDL-GVSEVSAQITLSSDPTLAQLTSIYRMASIVECEAVLFPNSTSSKNPV 90
Query: 420 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ-ATLPCDLGYINPIIK 575
DL W ++ + +L T +R T+GG +Q + P L +NPIIK
Sbjct: 91 HCDLIWVPSNSSASPKTILQTYGGNRFTVGGPITSNQIISFPLRLDSVNPIIK 143
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 62.9 bits (146), Expect = 1e-08
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +3
Query: 249 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 428
PFQ + G+E K+ S + ++ ++ YR A L ++E V P A + P++V
Sbjct: 2034 PFQWVVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVS 2093
Query: 429 LCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKIP 581
WT A ++ + + T+GG LM T LP DL +NP++K P
Sbjct: 2094 AVWTIASISPASASETSYYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGP 2145
>UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent
virus|Rep: Coat protein - Erysimum latent virus (ELV)
Length = 202
Score = 60.5 bits (140), Expect = 6e-08
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 249 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 428
PFQ F L + S ++ + + P +++ + +R A L L AVV PSA S+ P+TV
Sbjct: 46 PFQ-FEFPLPAGQEGSVTLPLATFPKMATFLSRHRRAQLTQLHAVVSPSAVSIGHPLTVQ 104
Query: 429 LCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKIPDSIHQPPQ 605
L W A T +L T +I++GG + A + +L +NP IK S P+
Sbjct: 105 LIWVPASSTTTSSQILGTYGGQQISVGGQVTNSSPAKVSANLLMMNPHIKDSTSYTDTPK 164
Query: 606 TL 611
L
Sbjct: 165 LL 166
>UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow
mosaic virus|Rep: Coat protein - Passion fruit yellow
mosaic virus
Length = 188
Score = 59.3 bits (137), Expect = 1e-07
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +3
Query: 246 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 425
+PFQ L GT S+SV++ + VSS+ YR A L +L A + P+ S P TV
Sbjct: 37 LPFQTKLASL-GTAEVSDSVSIAANAAVSSLATPYRHARLTSLVATIHPNHLSPSNPTTV 95
Query: 426 DLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIK 575
L W + T ++L IGG + + ++PC+L +NP+IK
Sbjct: 96 SLVWVPFNSTATSSDILNVFGGQSFCIGGAVNSLAAISVPCNLTNVNPVIK 146
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 56.0 bits (129), Expect = 1e-06
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +3
Query: 246 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 425
+PFQ G K + + ++S + GYR A L++ E P A + P++V
Sbjct: 1908 VPFQWAVASYAGDSAKFLTDDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFAKPISV 1967
Query: 426 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIK 575
WT A + L +T+GG LM T +P DL +NP+IK
Sbjct: 1968 TAVWTIASIAPATTTELQYYGGRLLTLGGPVLMGSVTRIPADLTRLNPVIK 2018
>UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosaic
virus|Rep: Coat protein - Turnip yellow mosaic virus
Length = 189
Score = 55.6 bits (128), Expect = 2e-06
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Frame = +3
Query: 249 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 428
PFQ GT+ S+T+ ++ +VS++ YR A L +L + P+ + P TV
Sbjct: 34 PFQSEVL-FAGTKDAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPTFPTTVG 92
Query: 429 LCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKIPDSIHQPPQ 605
+CW A+ V + T IGG + + + C L +NP +K P+
Sbjct: 93 VCWVPANSPVTPAQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPK 152
Query: 606 TLTSXSINP 632
L S + P
Sbjct: 153 LLISITAQP 161
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 54.4 bits (125), Expect = 4e-06
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Frame = +3
Query: 240 LVIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 419
L +PFQ D TG + + + ++++ YR A L+ +E V P PS P+
Sbjct: 1866 LDLPFQWKVTDFTGYAAYHGTDDLVASAVLTTLCAPYRHAELLYVEISVAPCPPSFSKPI 1925
Query: 420 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKIPDSIHQ 596
+ WT A ++ +IT+GG ++ T +P DL +NP IK S +
Sbjct: 1926 MFTVVWTPATLSPRDGKETDYYGGRQITVGGPVMLSSTTAVPADLARMNPFIKSSVSYND 1985
Query: 597 PPQ-TLTSXSI--NPLXAVLKXVRXRGLXXXGGHQKAPSGYLTP 719
P+ T++ ++ L RG+ +APSG TP
Sbjct: 1986 TPRWTMSVPAVTGGDTKIPLATAFVRGIV----RVRAPSGAATP 2025
>UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Virion
protein - Dulcamara mottle virus
Length = 188
Score = 54.4 bits (125), Expect = 4e-06
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = +3
Query: 303 VTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLAT 482
V++ + +++ + GYR A LV L + P+ ++ PVTVD+ W A+ T +L+
Sbjct: 52 VSLSASESLAKLTAGYRRAKLVELFLTITPTQLAIDNPVTVDVVWVPANSTATPSKILSV 111
Query: 483 PSSSRITIGGLALMHQA-TLPCDLGYINPIIK 575
R IGG Q +PC+L +N +IK
Sbjct: 112 YGGQRFLIGGTLTTSQVIRVPCNLQSVNAMIK 143
>UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Cacao yellow mosaic virus
Length = 188
Score = 54.4 bits (125), Expect = 4e-06
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = +3
Query: 240 LVIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 419
+V PFQ L G E ++ V++ + +++ YR A L +L+A++ P+ + P
Sbjct: 31 IVYPFQFTIASL-GVEPTADFVSIAAQAAITAYTSLYRHAILTDLQAIIHPNGYAPAFPT 89
Query: 420 TVDLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKIPDSIHQ 596
+V L W + T +L +GG + +PC L INPIIK +
Sbjct: 90 SVALAWVPYNSTATAAKILDVFGGQEFCVGGSINSTSPIIVPCPLTNINPIIKDSVTYTD 149
Query: 597 PPQTL 611
P+ L
Sbjct: 150 TPKLL 154
>UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosaic
virus|Rep: Virion protein - Wild cucumber mosaic virus
Length = 188
Score = 51.2 bits (117), Expect = 4e-05
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +3
Query: 279 GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTV 458
G + S+ +++ S P + + +R A L++ +A++ P + +P+TVDL W +A+
Sbjct: 44 GPKEVSSQISLSSCPELLRLTSLFRHARLLSAKAIITPFDGVVSLPITVDLAWVSANSPA 103
Query: 459 EGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKIPDSIHQPPQTL 611
++L S T GG + LP + +N ++K S P+ L
Sbjct: 104 SPTDILKIYGGSSYTFGGAINSTRPIELPLPINSVNDMLKDSVSYLDTPKLL 155
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 45.2 bits (102), Expect = 0.002
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +3
Query: 240 LVIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 419
L IPFQ + + +++ + + + + + + +R + LE V+ P+ + PV
Sbjct: 1912 LTIPFQWVAL-IIKSDSAAFTADLAASTTLKKLTDPFRSCEITQLEVVLMPTLNAFNNPV 1970
Query: 420 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ-ATLPCDLGYINPIIK 575
T+ W + + L IT GG M+ AT+P DL INP IK
Sbjct: 1971 TLHCVWRVNSIQPASGDELLYYGGQAITAGGPVSMNALATVPADLTRINPRIK 2023
>UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass
etched-line virus|Rep: Coat protein - Bermuda grass
etched-line virus
Length = 195
Score = 43.6 bits (98), Expect = 0.007
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +3
Query: 288 TKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGV 467
TK + + + ++ + YR A L++ E + P S P+ WT A ++
Sbjct: 52 TKHKTDDLSAFTTLAKLTVVYRHAELIHAEVELTPCPGSFSKPLMFLFVWTPASLSPATG 111
Query: 468 NVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKIPDSIHQPPQ 605
+ +IT+GG ++ T +P DL +NP+IK S + P+
Sbjct: 112 WETSYYGGRQITVGGPVMLSSTTVIPADLSRMNPVIKSSVSYNDCPR 158
>UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Belladonna mottle virus (BMDV)
Length = 190
Score = 43.2 bits (97), Expect = 0.009
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +3
Query: 240 LVIPFQRLYFDLT--GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
+V+PFQ F+ T GT + V++Q+ ++ + YR A +V +A++ P+ ++
Sbjct: 32 IVLPFQ---FEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSN 88
Query: 414 PVTVDLCWTTADVTVEGVNVL---ATPSSSRITIGGLALMHQATLPCDLGYINPIIKIPD 584
P+TV L W A+ +L S + G ++ +P +L +N ++K
Sbjct: 89 PLTVYLAWVPANSPATPTQILKLRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSV 148
Query: 585 SIHQPPQTL 611
+ P+ L
Sbjct: 149 TYTDTPKLL 157
>UniRef50_UPI0000DBFFDF Cluster: UPI0000DBFFDF related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBFFDF UniRef100 entry -
Rattus norvegicus
Length = 423
Score = 37.5 bits (83), Expect = 0.47
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 449 RHS*RSQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQNPRFHTPTTPDFNIHXH 625
RHS R +C H IL+H + S Y+ H + +H+ +++ +T D N H H
Sbjct: 54 RHSYRHRCT-HTQILTHRHTHSHTYSHRHTLIHRHVHRHSNKHRPINTQIHTDINTHTH 111
>UniRef50_A1A5Z7 Cluster: Zgc:158441; n=7; Deuterostomia|Rep:
Zgc:158441 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 917
Score = 36.7 bits (81), Expect = 0.81
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Frame = +3
Query: 243 VIPFQRLYFDLTGTETKSNSVT--VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIP 416
+I Q + DL+ T + + LP++ +I + V+ A+ PS PSL+
Sbjct: 708 IIKLQPVTLDLSWTPVSKKQLAWLIHHLPSLKDLIMSGCSSLCVS--ALSSPSCPSLR-- 763
Query: 417 VTVDLCWTTADVTVEGVNVLATP-SSSRITIGGLALMHQATLPCDLGYINPIIKIPDSIH 593
T+DLCW + +++ P S SR + L + + L I +++ S+
Sbjct: 764 -TLDLCWAVGVKDSQIKDLIVQPGSESRSRLRSLVSLRLSGLELSDAVIKTMVRHMPSLR 822
Query: 594 QPP----QTLTSXSINPLXA 641
Q Q LT SIN L A
Sbjct: 823 QLDLSYCQGLTDQSINLLTA 842
>UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 911
Score = 36.7 bits (81), Expect = 0.81
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +3
Query: 270 DLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTAD 449
DLT T T + + + A + A++ P+A +L +P DL T D
Sbjct: 515 DLTTTATDLTTTATDLTTTATDLTVPTVTALMETATALMVPTATALMVPTATDLTTTATD 574
Query: 450 VTVEGVNVLATPSSSRITIGGLALMHQAT 536
+T T + + +T ALM AT
Sbjct: 575 LTTTATATDLTTTVTDLTTTATALMETAT 603
Score = 33.9 bits (74), Expect = 5.7
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +3
Query: 294 SNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNV 473
+ + T ++P V+++++ + A++ P+A L +P DL T D+T +
Sbjct: 662 TTTATDLTVPTVTALMETATALMVPTATALMVPTATDLMVPTATDLTTTVTDLTTTATAL 721
Query: 474 LATPSSSRITIGGLALMHQAT 536
+ T ++ + ALM AT
Sbjct: 722 METATALTVPT-ATALMETAT 741
>UniRef50_Q5JJ70 Cluster: Hypothetical membrane protein, conserved;
n=1; Thermococcus kodakarensis KOD1|Rep: Hypothetical
membrane protein, conserved - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 541
Score = 35.5 bits (78), Expect = 1.9
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 324 NVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRI 500
NVS +KG ++ Y V+ VV P SL + +D ++ + TVE +T S SR+
Sbjct: 180 NVSLSVKGVKELYSVSKSMVVAPGYSSLVFEIPIDSKYSEGEYTVELAVRCSTTSVSRL 238
>UniRef50_A3VLC7 Cluster: Transcriptional regulator, MerR family
protein; n=1; Rhodobacterales bacterium HTCC2654|Rep:
Transcriptional regulator, MerR family protein -
Rhodobacterales bacterium HTCC2654
Length = 462
Score = 34.3 bits (75), Expect = 4.3
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 537 LPCDLGYIN--PIIKIPDSIHQPPQTLTSXSINPLXAVLKXVRXRGLXXXGGHQKAPSGY 710
+P D GY + P++ +PD P I P+ L+ +R RGL H A S
Sbjct: 389 IPVDAGYSDYAPVLVMPDIDDDPADGTLPPDIAPVGPRLRRLRARGLTLPPAHLSALSDR 448
Query: 711 LTPLG 725
L LG
Sbjct: 449 LKTLG 453
>UniRef50_A5DFG8 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 559
Score = 33.5 bits (73), Expect = 7.6
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 512 SRPYASSHPPLRSRLHQPDHQNPRFHTPTTPDFNIHXH 625
S+P + SH L LHQP HQNP H P N H
Sbjct: 157 SQP-SQSHSNLHQPLHQPMHQNPLLHHLLLPHLNEANH 193
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,128,327
Number of Sequences: 1657284
Number of extensions: 15552962
Number of successful extensions: 44660
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 41935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44578
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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