Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H24
         (905 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.9  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   7.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 45  SAASAIPSLVNAFSSSKPPQTDNPSAR 125
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 297 SIWFRCQ*DRSTGVEKG*PNVEETVPG 217
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 297 SIWFRCQ*DRSTGVEKG*PNVEETVPG 217
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 252 FQRLYFDLTGTETKSNS-VTVQSLPNVSSIIKGYRDAYLVNLEAVV 386
           F  L  +L G     N  VT+  LPNV+S +     A   NLE VV
Sbjct: 197 FVSLVRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 526 IKPPSPAISATSTRSSKS 579
           I PP+P  S TST  SKS
Sbjct: 7   IGPPTPHESNTSTPVSKS 24


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,499
Number of Sequences: 336
Number of extensions: 3734
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)