Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H24
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 33 0.31
04_04_1125 + 31085106-31085714 30 2.2
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 3.8
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.1
02_04_0238 + 21186072-21186883,21187315-21189346 29 5.1
05_03_0637 - 16465433-16466242 28 8.9
04_01_0041 - 464695-464850,467485-469029 28 8.9
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.9
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.1 bits (72), Expect = 0.31
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -2
Query: 91 EEEKALTKEGMAEAAETXKGTISSMNRSSS 2
E+++ LTK G + +ET KG++ S++RS S
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRSES 180
>04_04_1125 + 31085106-31085714
Length = 202
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 532 PPSPAISATSTRSSKSPIPYTNHPRL*HPXPSIPXTP 642
PP+P +T + +P P+T P P P+ P TP
Sbjct: 59 PPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATP 95
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 515 RPYASSHPPLRSRLHQPDHQNPRFHTP 595
RP+ H P H P H PR H P
Sbjct: 407 RPWCRPHTPRPRSPHSPTHPRPRLHHP 433
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.8
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 282 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 455
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 456 VEGVNVLATPSSSRITIGGLALMHQ 530
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 529 KPPS-PAISATST--RSSKSPIPYTNHPRL*HPXPSIPXTP 642
+PPS PAI+A S+ RSS SP P R P PS+P P
Sbjct: 253 RPPSTPAITAVSSVPRSSPSPAP-APAARPASPSPSLPLPP 292
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 632 GIDGXGC*SLGWLVYGIGDFDDRVDVAEIAGEGGLMHKGETANSN 498
GIDG + WL G+ + ++ V I G GGL G+T +N
Sbjct: 169 GIDGPKIELIRWLTEGVSGPEQQLKVVPIVGSGGL---GKTTLAN 210
>05_03_0637 - 16465433-16466242
Length = 269
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 524 ASSHPPLRSRLHQPDHQNPRFH 589
++S PPLR L +P H +P FH
Sbjct: 132 STSAPPLRPLLPRPPHLHPAFH 153
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 258 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPVTVD 428
R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V +D
Sbjct: 45 RPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAVPLD 102
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 234 QRLVIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 414 PVTVDLCWTTADVTVEGVNVLATPSS 491
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,510,488
Number of Sequences: 37544
Number of extensions: 467650
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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