Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H24
(905 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 32 0.73
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055) 31 1.7
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9) 31 1.7
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 30 3.0
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013) 29 3.9
SB_30122| Best HMM Match : YadA (HMM E-Value=2) 29 5.2
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 29 5.2
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 29 6.8
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 31.9 bits (69), Expect = 0.73
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 413 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLR 547
T + LL YC R AGHPF+L Y + R Y +S PLR
Sbjct: 91 TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 31.5 bits (68), Expect = 0.97
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 527 SSHPPLRSRLHQPDHQNPRFHTPTTPDFNIH 619
S P ++ +H PD+Q FHTP N+H
Sbjct: 555 SDRQPHKNTVHTPDNQPSTFHTPGNHPSNVH 585
>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
Length = 685
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +2
Query: 479 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQN------PRFHTPTTPDFNIHXH 625
H + +H + ++R +HP ++ +H P H N R T T PD +H H
Sbjct: 297 HKYANAHTHTQTRKCTYTHPGMQMHVHAPRHANTCTRTQARKCTYTHPDTQMHLH 351
Score = 29.1 bits (62), Expect = 5.2
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Frame = +2
Query: 284 RNQIEQC-HCAITTERLLH-HKRLPRRVSCQS*GCRFSFRP*PENTSHS*PLLDYC*RHS 457
R Q +C + T+ +H HK Q+ C ++ P + H+ + C R
Sbjct: 277 RTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTYT-HPGMQMHVHAPRHANTCTRTQ 335
Query: 458 *RSQCAGHPFILSHYY---WRSRPYASSHPPLRSRLHQPDHQNPRFHTPTT------PDF 610
R HP H + ++R +HP + +H P H N R T T PD
Sbjct: 336 ARKCTYTHPDTQMHLHAARTQTRRCTYTHPVTQINVHAPRHVNARTRTQTLKCTYTHPDT 395
Query: 611 NIHXH 625
IH H
Sbjct: 396 QIHVH 400
>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
Length = 231
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +2
Query: 479 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQN------PRFHTPTTPDFNIHXH 625
H + +H + ++R +HP ++ +H P H N R T T PD +H H
Sbjct: 72 HKYANAHTHTQTRKCTYTHPGMQMHVHAPRHANTCTRTQARKCTYTHPDTQMHLH 126
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -1
Query: 455 CDVSSSPTKVNCDWYFQARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 276
C + P + W+F + G K DS + + + G V +HS VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334
Query: 275 KIE 267
+ E
Sbjct: 335 EEE 337
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +2
Query: 509 RSRPYASSHPPLRSRLHQPDHQN------PRFHTPTTPDFNIHXH 625
++R Y +HP R +H P H + R T T PD +H H
Sbjct: 208 QTREYTYTHPDTRIHVHTPRHASTRTCTQARMSTYTHPDTQMHVH 252
>SB_40803| Best HMM Match : SRCR (HMM E-Value=0.00013)
Length = 269
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 449 RHS*RSQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQNPRFHTPT 598
RH+ +Q HP + + R+R Y +HP +H P H N R T T
Sbjct: 13 RHA-NAQTPRHPNVRTRNKTRTRTY--THPDAPIHVHAPRHANVRTRTQT 59
>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
Length = 408
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 393 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 503
S P K+P+T T+A+VT +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +3
Query: 267 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 374
F +TG E KS+S+T++ +P V ++ +G D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 532 PPSPAISATSTRSSKSPIPYT--NHPRL*HPXPSIPXTP 642
PPS + S T+ + + P P T HP+L P P P P
Sbjct: 330 PPSDSPSTTTPTTPQPPTPTTPKTHPQLGPPPPPPPPPP 368
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,208,227
Number of Sequences: 59808
Number of extensions: 486694
Number of successful extensions: 1412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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