Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H24
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06800.1 68418.m00768 myb family transcription factor contain...    29   3.2  
At1g14030.1 68414.m01658 ribulose-1,5 bisphosphate carboxylase o...    29   3.2  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   4.2  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    29   4.2  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    29   4.2  
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF...    29   5.6  
At1g50090.1 68414.m05619 aminotransferase class IV family protei...    28   7.4  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   9.8  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.8  

>At5g06800.1 68418.m00768 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 375

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 515 RPYASS---HPPLRSRLHQPDHQNPRFHTPTTPDFNIH 619
           R Y++S   H    S  HQP   +PRF +P  P F+IH
Sbjct: 146 RTYSNSNVTHLNFTSSQHQPKQSHPRFSSP--PSFSIH 181


>At1g14030.1 68414.m01658 ribulose-1,5 bisphosphate carboxylase
           oxygenase large subunit N-methyltransferase, putative
           strong similarity to SP|P94026 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           ([Ribulose- bisphosphate-carboxylase]-lysine
           N-methyltransferase) {Nicotiana tabacum}; contains Pfam
           profile PF00856: SET domain; Rare GC intron splice site
           at 49572 is inferred from protein alignment and is not
           confirmed experimentally
          Length = 482

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
 Frame = +3

Query: 294 SNSVTVQS-LPNVSSIIKGYRDAYLVNL--EAVVFP-SAPSLKIPVTVDLCWT-TADVTV 458
           S SV V S    + SI K    ++L +   +++V P SA S ++P  V   W    D  V
Sbjct: 2   SASVAVVSGFLRIPSIQKSQNPSFLFSRPKKSLVRPISASSSELPENVRNFWKWLRDQGV 61

Query: 459 EGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKIPDSIHQPPQTLTSXSINPLX 638
                +A P+   +   GL L+ +     D+G    +++IP  +   P+T+T+  I PL 
Sbjct: 62  VSGKSVAEPA---VVPEGLGLVARR----DIGRNEVVLEIPKRLWINPETVTASKIGPLC 114

Query: 639 AVLK 650
             LK
Sbjct: 115 GGLK 118


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 532 PPSPAISATSTRSSKSPIPYTNHPRL*HPXPSIPXTP 642
           PP+P  S  S     SP P T  P +  P P +P  P
Sbjct: 137 PPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDP 173


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/69 (31%), Positives = 25/69 (36%)
 Frame = +1

Query: 529 KPPSPAISATSTRSSKSPIPYTNHPRL*HPXPSIPXTPY*XEFAXGG*XLPVVIRRLHQG 708
           KPPSP      + S K P P  + PR   P P     P            P   R   Q 
Sbjct: 130 KPPSPRAEVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPTLRPASTRVPSQR 189

Query: 709 ISPPSVTGP 735
           I+P SV  P
Sbjct: 190 ITPHSVPSP 198


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/69 (31%), Positives = 25/69 (36%)
 Frame = +1

Query: 529 KPPSPAISATSTRSSKSPIPYTNHPRL*HPXPSIPXTPY*XEFAXGG*XLPVVIRRLHQG 708
           KPPSP      + S K P P  + PR   P P     P            P   R   Q 
Sbjct: 129 KPPSPRAEVPRSLSPKPPSPRADLPRSLSPKPFDRSKPSSASANAPPTLRPASTRVPSQR 188

Query: 709 ISPPSVTGP 735
           I+P SV  P
Sbjct: 189 ITPHSVPSP 197


>At3g18360.1 68416.m02335 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 285

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 529 KPPSPAISATSTRSSKSPIPYTNHPRL*HPXP 624
           KPPSP+  +++ +     I YT+ PR+ H  P
Sbjct: 57  KPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNP 88


>At1g50090.1 68414.m05619 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 367

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +3

Query: 309 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPS 488
           V+S  N S ++K   +A       V+F  A + K    V  C    ++ +   N+++TP 
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTC----NIFILKGNIVSTPP 256

Query: 489 SSRITIGGLALMHQATLPCDLGY 557
           +S   + G+       L  D+GY
Sbjct: 257 TSGTILPGITRKSICELARDIGY 279


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 532 PPSPAISATSTRSSKSPIPYTNHPRL*HPXPSIP 633
           PP P I          P+P  N P L  P PS P
Sbjct: 325 PPIPTIPTLPPLPVLPPVPIVNPPSLPPPPPSFP 358


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 312 QSLPNVSSIIKGYRDAY 362
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,795
Number of Sequences: 28952
Number of extensions: 348881
Number of successful extensions: 1068
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)