Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H22
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 134 2e-32
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 94 3e-20
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 88 2e-18
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 83 5e-17
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 83 7e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 81 3e-16
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 77 4e-15
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 76 8e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 70 4e-13
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 70 4e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 68 2e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 65 1e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 64 2e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 64 2e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 6e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 62 1e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 2e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 5e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 59 7e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 3e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 56 9e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 52 8e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 48 2e-06
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 2.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.6
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 27 4.6
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 134 bits (324), Expect = 2e-32
Identities = 63/128 (49%), Positives = 87/128 (67%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+L PTREL + H+V ++A F +K QE LR+ PDIVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
H+RN+ F + +IE++V+DEADRML++ FA+++ EII+ C RQTMLFSATM ++ DL
Sbjct: 394 HMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDL 453
Query: 646 AAVSLXKP 669
+SL +P
Sbjct: 454 IRLSLNRP 461
Score = 70.5 bits (165), Expect = 3e-13
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = +3
Query: 54 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 233
++SF +MNLSRP++K + +L F PT IQ TIP+ALLGKD+ +++PI
Sbjct: 258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPI 317
Query: 234 LERLLYKAK 260
LERLLY+ K
Sbjct: 318 LERLLYRPK 326
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 93.9 bits (223), Expect = 3e-20
Identities = 47/131 (35%), Positives = 82/131 (62%), Gaps = 1/131 (0%)
Frame = +1
Query: 280 GXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRL 459
G +++ PTREL ++ V ++L ++ + + + L + ++++ATPGRL
Sbjct: 163 GVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRL 222
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMXEEX 636
+DH++NT F ++ LV+DEADR+L+ F ++M++I++ S RQT+LFSAT +
Sbjct: 223 LDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKV 282
Query: 637 KDLAAVSLXKP 669
+DLA +SL KP
Sbjct: 283 EDLARISL-KP 292
Score = 36.3 bits (80), Expect = 0.006
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 242
F ++ LS + KAI + F T IQ +IP L G+DV +++P +E
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE- 149
Query: 243 LLYKAK 260
+LY K
Sbjct: 150 MLYALK 155
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 87.8 bits (208), Expect = 2e-18
Identities = 44/128 (34%), Positives = 71/128 (55%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
+VL PTREL ++ + D+ Q L + P +++ TPGRL+D
Sbjct: 118 VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMD 177
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
H+ NT F L +++ L++DEADR+LD F + +I++ +R+T+LFSATM + + L
Sbjct: 178 HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKL 237
Query: 646 AAVSLXKP 669
SL +P
Sbjct: 238 QRASLHQP 245
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
+F + + L +A L F PTPIQ IP+ L +DV + LP+++
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 240 RL 245
L
Sbjct: 107 EL 108
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 83.0 bits (196), Expect = 5e-17
Identities = 46/130 (35%), Positives = 69/130 (53%)
Frame = +1
Query: 280 GXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRL 459
G LV+ PTREL + ++ + + K ++ L + +I++ TPGRL
Sbjct: 113 GALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRL 171
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXK 639
+ HI +F +++L+LDEADR+LD F + I+ RQTMLFSAT + K
Sbjct: 172 LQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVK 231
Query: 640 DLAAVSLXKP 669
DLA +SL P
Sbjct: 232 DLARLSLQNP 241
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 82.6 bits (195), Expect = 7e-17
Identities = 47/128 (36%), Positives = 66/128 (51%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+L P REL + V + ++ ++ Q S+L PDIV+ATPGR +
Sbjct: 143 LILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL- 201
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
H++ L SIE +V DEADR+ + FA Q+ EI+ RQT+LFSAT+ D
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDF 261
Query: 646 AAVSLXKP 669
A L P
Sbjct: 262 AKAGLQDP 269
Score = 46.4 bits (105), Expect = 5e-06
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +3
Query: 57 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
++F +M L++ L++AI F PTPIQ TIP+ L G+DV +++P++
Sbjct: 69 SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI 128
Query: 237 ERL 245
E L
Sbjct: 129 EHL 131
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 80.6 bits (190), Expect = 3e-16
Identities = 50/139 (35%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Frame = +1
Query: 259 KEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIV 438
K G G P +++ PTREL ++ + + +K Q + L++ +IV
Sbjct: 487 KTGEG-PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIV 545
Query: 439 IATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLF 612
+ TPGR+ID + LH LVLDEADRM D F Q+ II P RQT+LF
Sbjct: 546 VCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLF 605
Query: 613 SATMXEEXKDLAAVSLXKP 669
SAT + LA L KP
Sbjct: 606 SATFPRAMEALARKVLKKP 624
Score = 33.5 bits (73), Expect = 0.040
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
S+ LS + I SL + PT IQA IP G+DV ++LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 240 RL 245
+
Sbjct: 479 HI 480
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 76.6 bits (180), Expect = 4e-15
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P L+L PTREL ++H +R+ D++ Q + Q D++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS----PKRQTMLFSATM 624
L+D I + L +I+ LVLDEADRMLD F Q++ I+ +RQT++FSAT
Sbjct: 316 LVDLI-DRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATF 374
Query: 625 XEEXKDLA 648
+ + LA
Sbjct: 375 PRDIQLLA 382
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
F + L+ L++ I + PTP+Q +IPI G+D+ ++ PIL
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 75.8 bits (178), Expect = 8e-15
Identities = 47/124 (37%), Positives = 66/124 (53%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P LVL PTREL ++ + + Q L + +I IATPGR
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGR 255
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEX 636
L+D + + + L + LVLDEADRMLD F Q+++I+ Q P RQT++FSAT +E
Sbjct: 256 LLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEV 314
Query: 637 KDLA 648
+ LA
Sbjct: 315 QRLA 318
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 90 LMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
++K + L F PTPIQ P+A+ G+D+ Y LP +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAI 181
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 70.1 bits (164), Expect = 4e-13
Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+L PTREL ++ L D+ Q L + P +V+ATPGRL D
Sbjct: 79 LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Query: 466 HIRNTPS---FGLHSIEVLVLDEADRMLDEYFAEQMKEI--IRQCSPKRQTMLFSATMXE 630
IR+ GL I+ LV+DEADR+L FA+ + + + S RQT+LF+AT+ +
Sbjct: 139 LIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTD 198
Query: 631 EXKDL 645
+ L
Sbjct: 199 AIRQL 203
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
SF ++ +S L+ + +L PT IQ I L G++ + LPI+E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 240 R 242
+
Sbjct: 68 K 68
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 70.1 bits (164), Expect = 4e-13
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P LV+ PTREL + + L Q K +++ +N ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAKNASVIIGTPGR 295
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-----SPKRQTMLFSAT 621
L+D I N S + LVLDEADRMLD F + ++ II + RQT+ FSAT
Sbjct: 296 LLDLI-NDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSAT 354
Query: 622 MXEEXKDLAAVSLXKP 669
E + LAA L P
Sbjct: 355 WPESVRALAATFLKDP 370
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 105 GSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 245
G N+ PTPIQAAT P L G+DV + +P L+ L
Sbjct: 181 GLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYL 227
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 67.7 bits (158), Expect = 2e-12
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Frame = +1
Query: 250 TRRKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKY--------- 402
TRR G L++ PTREL ++ VT++L + Y
Sbjct: 64 TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTN 123
Query: 403 -QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIR 579
S +NP +VI TPGRL + + + S +E+L+LDEAD ++D F ++ II
Sbjct: 124 DLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIIS 180
Query: 580 QCSPKRQTMLFSATMXE 630
Q +R+T LFSATM +
Sbjct: 181 QLPKQRRTGLFSATMND 197
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
SF ++N+ + L A+ + F TP+QA IP+ L KD+ Y+LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 240 RL 245
++
Sbjct: 62 KV 63
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 64.9 bits (151), Expect = 1e-11
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVK--YQESVLRQNPDIVIATPGRL 459
L+LVPTREL +V+ V +L F + Q +L PDIVIATP R
Sbjct: 92 LLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRC 151
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXK 639
+ H+ + L ++ LV+DEAD ML + E MK + R Q+ L SAT+ +
Sbjct: 152 VVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIA 210
Query: 640 DLAAVSLXKP 669
L + P
Sbjct: 211 SLQKLVCRNP 220
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/63 (39%), Positives = 34/63 (53%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
+F + NL L +AI F PT +Q+ TIP+AL GKD+ Y++PILE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 240 RLL 248
LL
Sbjct: 75 LLL 77
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 64.5 bits (150), Expect = 2e-11
Identities = 37/128 (28%), Positives = 62/128 (48%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+L PTREL ++ V L V+ + L+ +V+ TPGR+ D
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
I+ + ++++ VLDEAD ML F +Q+ +I + P Q +L SATM ++ ++
Sbjct: 151 MIQRR-ALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 646 AAVSLXKP 669
+ P
Sbjct: 210 TTKFMRDP 217
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 45 YDENA-SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXY 221
YDE +F +MNL L++ I + F P+ IQ I L +DV +
Sbjct: 14 YDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF 73
Query: 222 MLPILERL 245
+ +L+++
Sbjct: 74 SISVLQKI 81
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 64.1 bits (149), Expect = 2e-11
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ-NPDIVIATPGRLI 462
++L PTREL ++ R+L +E+ +R+ N +++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 463 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATM 624
DH++N S + +LDEADR++D FAE + I + K + + FSATM
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATM 230
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.9 bits (146), Expect = 6e-11
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNP-----DIVIATP 450
+V+VPTREL +V ++++ L + D++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268
Query: 451 GRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS-PK 594
GRL+DHIRN SF L + +V+DEADR+LD+ F + + ++ + S PK
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 33 EPPPYDENAS--FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIAL 164
EP D N + F ++N+S L++ + N +QAA +P+ L
Sbjct: 116 EPITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLL 161
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 62.1 bits (144), Expect = 1e-10
Identities = 36/120 (30%), Positives = 59/120 (49%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+L PTREL ++ V L V L +V TPGR+ D
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
IR + ++++L+LDEAD +L++ F EQ+ +I R P Q ++ SAT+ ++ ++
Sbjct: 153 MIRRR-NLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 57 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDV 179
+SF MNL L++ I + + P+ +Q+ I G+DV
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDV 61
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.9 bits (141), Expect = 2e-10
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV--LRQNPDIVIATPGRL 459
+++ PTREL +++ +L+ F + K QE LR+ D+ I TP RL
Sbjct: 119 IIVAPTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMXEEX 636
+ I+ SF +E V+DEADR+ + F EQ I+ C S LFSAT+
Sbjct: 178 VQAIQTGLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRV 235
Query: 637 KDLAAVSLXKP 669
++LA V P
Sbjct: 236 EELAKVVTVDP 246
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 59.7 bits (138), Expect = 5e-10
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
LV+ PTREL ++ + V+ Q+ +L ++P +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 466 HI-RNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII----RQCSPKRQTMLFSATMXE 630
I N + I+ LVLDEADR+L + E++ +++ +RQT +FSAT E
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
Score = 33.5 bits (73), Expect = 0.040
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 57 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
+++ + +LS ++ ++ F P PIQ+ IP A +G D+ + +PIL
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 237 ERLL 248
E L
Sbjct: 182 EHCL 185
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 59.3 bits (137), Expect = 7e-10
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQ---FXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
+++ PTREL +++ V +L K +++ +R+ +I+I TPGR
Sbjct: 220 VIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGR 279
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII----RQCS--------PKRQ 600
L DH+ NT + + + +VLDE DR++D F E + +I+ Q S P R+
Sbjct: 280 LADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRK 339
Query: 601 -TMLFSATMXEEXKDLAAVSL 660
TML SATM + K L+ +L
Sbjct: 340 VTMLCSATMKDTVKRLSDSAL 360
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 57.2 bits (132), Expect = 3e-09
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P +VL PTREL ++ + A+ + Q + Q IV+ATPGR
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGR 385
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII-------------------R 579
L+D + F L +V+DEADRMLD F + + +I+
Sbjct: 386 LLDCLERR-LFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATAN 444
Query: 580 QCSPKRQTMLFSATMXEEXKDLAAVSLXKP 669
S +RQT++FSAT+ +LA L +P
Sbjct: 445 SSSSRRQTIMFSATLPPRVANLAKSYLIEP 474
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 78 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
L ++K + +N+ P+ IQ A IP+ L KD+ +++P++
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI 308
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 55.6 bits (128), Expect = 9e-09
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Frame = +1
Query: 271 GSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXX-DVKYQESVLR---QNPDIV 438
G LVL TREL ++ + +++ ++K + ++P IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 439 IATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFS 615
+ATPGRL +R ++S++ VLDE D++L+ ++E+ R P++Q M+FS
Sbjct: 178 VATPGRLNALVREK-ILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFS 236
Query: 616 ATMXEEXKDLAAVSLXKP 669
AT+ E + + + P
Sbjct: 237 ATLSNEIRPICKKFMQNP 254
Score = 33.5 bits (73), Expect = 0.040
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 54 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 233
+ F + L L++AI F HP+ +Q IP ++LG DV ++L
Sbjct: 50 STGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLST 109
Query: 234 LERL 245
L+++
Sbjct: 110 LQQI 113
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 52.4 bits (120), Expect = 8e-08
Identities = 35/128 (27%), Positives = 55/128 (42%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+LVPTREL + V + L + ++ L IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+ V+DEAD++L F +++++ RQ L+SAT K+
Sbjct: 176 -LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNF 234
Query: 646 AAVSLXKP 669
L KP
Sbjct: 235 MDKHLNKP 242
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 242
F + L R L+ I F P+PIQ +IPIAL G+D+ +++P LE+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 243 L 245
+
Sbjct: 106 V 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 47.6 bits (108), Expect = 2e-06
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P + L P+REL ++ V ++ ++ K + + IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI----DAQIVIGTPGT 240
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR-QTMLFSATMXEE 633
++D ++ I+V VLDEAD MLD+ I+ P+ Q +LFSAT E
Sbjct: 241 VMDLMKRR-QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 299
Query: 634 XKDLA 648
+ A
Sbjct: 300 VEKYA 304
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 503 SRFWCWTKLTGCWMNT 550
SRF+C+TK+ G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 87 PLMKAIGSLNFVHPTP 134
PL +AIGS +F+HP P
Sbjct: 127 PLRRAIGSYDFLHPRP 142
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/68 (22%), Positives = 21/68 (30%)
Frame = +2
Query: 89 SHEGYWLSELCTPNAHTSRNHSYCTFXXXXXXXXXXXXXXDGCIHAAHTGASPVQGERRG 268
++ GYW +L N H H AH G SP+ +
Sbjct: 94 AYHGYWAEDLTQLNPHFGTKQDLTELVDQLHKRNMLCMIDIVVNHMAHAGDSPIDYSKYA 153
Query: 269 PDHQGSWY 292
P + S Y
Sbjct: 154 PFNSPSHY 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,498
Number of Sequences: 5004
Number of extensions: 60973
Number of successful extensions: 230
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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