Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H22
         (872 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    73   9e-15
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    27   0.75 
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   5.3  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 73.3 bits (172), Expect = 9e-15
 Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
 Frame = +1

Query: 268 TGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIAT 447
           T +P  +++ PTREL  ++H   R+ A               V++Q  ++R    +++AT
Sbjct: 247 TRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQLMRGGCHVLVAT 306

Query: 448 PGRLIDHI-RNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS----PKRQTMLF 612
           PGRL+D I R   +F   ++  +VLDEADRMLD  F   +++++   +     +RQT++F
Sbjct: 307 PGRLLDFIDRGYVTF--ENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQTLMF 364

Query: 613 SATMXEEXKDLA 648
           SAT   E ++LA
Sbjct: 365 SATFPAEIQELA 376



 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 28/86 (32%), Positives = 39/86 (45%)
 Frame = +3

Query: 30  EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXX 209
           E PP + E  SF    L   +M  +   ++  PTPIQ   IPI L G+D+          
Sbjct: 167 ENPPDHVE--SFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGK 224

Query: 210 XXXYMLPILERLLYKAKGGDRITRXP 287
              +MLP++  LL K    +  TR P
Sbjct: 225 TAAFMLPMIHHLLDKEDSLELRTRNP 250


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 520 DEADRMLDEYFAEQMKEIIRQCSPKR 597
           D  D + +E  AE++KEI R  +PK+
Sbjct: 404 DPQDPVSEEELAEELKEIARSLNPKK 429


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 248 QETLQYGQHVCSRLTSASGG 189
           Q+  Q+GQH C R +   GG
Sbjct: 279 QQQQQHGQHCCCRGSHCGGG 298


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,830
Number of Sequences: 2352
Number of extensions: 17185
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)