Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H22
(872 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 141 6e-34
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 102 3e-22
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 99 3e-21
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 94 1e-19
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 89 5e-18
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 89 5e-18
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 87 2e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 86 3e-17
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 86 3e-17
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 84 1e-16
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 83 2e-16
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 83 2e-16
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 83 2e-16
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 83 2e-16
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 83 2e-16
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 81 1e-15
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 79 5e-15
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 78 7e-15
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 78 9e-15
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 77 2e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 77 2e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 76 3e-14
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 76 3e-14
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 76 4e-14
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 75 5e-14
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 75 6e-14
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 75 8e-14
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 75 8e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 74 1e-13
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 73 3e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 73 3e-13
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 73 3e-13
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 72 4e-13
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 72 6e-13
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 72 6e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 71 1e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 70 2e-12
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 68 9e-12
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 63 3e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 63 3e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 62 6e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 1e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 1e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 60 2e-09
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 60 3e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 60 3e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 60 3e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 60 3e-09
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 55 7e-08
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 53 2e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 53 2e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 53 2e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 52 4e-07
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 52 5e-07
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 51 9e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 50 2e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 6e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 46 3e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 1e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 40 0.003
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 35 0.082
At5g15530.1 68418.m01818 biotin carboxyl carrier protein 2 (BCCP... 32 0.58
At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ... 30 2.3
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 29 3.1
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 29 4.1
At5g56210.1 68418.m07014 expressed protein ; expression supporte... 29 5.4
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 141 bits (341), Expect = 6e-34
Identities = 70/140 (50%), Positives = 91/140 (65%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+L PTREL ++H++ + LAQF V+ QE VLR PDIV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
H+RN+ S L + VL+LDEADR+L FA ++ E++R C +RQTMLFSATM EE K+L
Sbjct: 302 HLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKEL 361
Query: 646 AAVSLXKPSNCS*TPIRRWP 705
+SL KP S P R P
Sbjct: 362 VKLSLNKPLRLSADPSARRP 381
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
+F +NLSRPL++A +L + PTPIQAA IP+AL G+D+ + LP LE
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 240 RLLYKAK 260
RLL++ K
Sbjct: 228 RLLFRPK 234
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 102 bits (245), Expect = 3e-22
Identities = 50/130 (38%), Positives = 78/130 (60%)
Frame = +1
Query: 280 GXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRL 459
G LV+ PTREL + + V ++L ++ K + +L + ++++ATPGRL
Sbjct: 228 GVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRL 287
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXK 639
+DH+ NT F +++ LV+DEADR+L++ F E +K+I+ RQT LFSAT + +
Sbjct: 288 LDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVE 347
Query: 640 DLAAVSLXKP 669
DLA VSL P
Sbjct: 348 DLARVSLTSP 357
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 54 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 233
N +F +++LS K+I + F T IQA IP ++G+DV +++P
Sbjct: 153 NKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA 212
Query: 234 LERLLYKAK 260
+E LLY+ K
Sbjct: 213 VE-LLYRVK 220
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 99.1 bits (236), Expect = 3e-21
Identities = 51/130 (39%), Positives = 75/130 (57%)
Frame = +1
Query: 280 GXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRL 459
G +V+ PTREL + V +L + + + + + ++VIATPGRL
Sbjct: 163 GVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRL 222
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXK 639
+DH++NT +F ++ LV+DEADR+L+E F E M +I++ RQT LFSAT + K
Sbjct: 223 LDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVK 282
Query: 640 DLAAVSLXKP 669
DLA VSL P
Sbjct: 283 DLARVSLTSP 292
Score = 36.3 bits (80), Expect = 0.027
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +3
Query: 54 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 233
N +F +++LS AI + F + T IQA +I L GKDV +++P
Sbjct: 88 NVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPA 147
Query: 234 LERLLYKAKGGDR 272
+E LL+K + R
Sbjct: 148 VE-LLFKERFSPR 159
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 94.3 bits (224), Expect = 1e-19
Identities = 49/134 (36%), Positives = 73/134 (54%)
Frame = +1
Query: 280 GXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRL 459
G +++ PTREL A+ V ++ +F + E +I++ PGRL
Sbjct: 145 GCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRL 204
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXK 639
+ H+ TP+F +++L+LDEADR+LD F Q+ II Q RQT+LFSAT ++ K
Sbjct: 205 LQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVK 264
Query: 640 DLAAVSLXKPSNCS 681
DLA +SL P S
Sbjct: 265 DLARLSLRDPEYIS 278
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 242
F + +S + + +V T +Q+A IP AL G+D+ +++PILE+
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 243 L 245
L
Sbjct: 133 L 133
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 88.6 bits (210), Expect = 5e-18
Identities = 47/127 (37%), Positives = 69/127 (54%)
Frame = +1
Query: 289 VLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLIDH 468
VL PTREL ++ L D Q L + P +++ATPGRL DH
Sbjct: 94 VLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDH 153
Query: 469 IRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDLA 648
+ +T F L S++ LVLDEADR+L+E F + + +I+ + +R+T LFSATM ++ + L
Sbjct: 154 MSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQ 213
Query: 649 AVSLXKP 669
L P
Sbjct: 214 RACLRNP 220
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
+F + + L+KA L + +P+ IQA +P AL GKDV + +PIL+
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 240 RLL 248
LL
Sbjct: 70 ALL 72
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 88.6 bits (210), Expect = 5e-18
Identities = 46/133 (34%), Positives = 70/133 (52%)
Frame = +1
Query: 271 GSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATP 450
G L+L PTR+L + T++L +F ++ Q L + PD++IATP
Sbjct: 97 GGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATP 156
Query: 451 GRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXE 630
GRL+ + L ++E +V DEAD + FAEQ+ +I+ Q S RQT+LFSAT+
Sbjct: 157 GRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPS 216
Query: 631 EXKDLAAVSLXKP 669
+ A L +P
Sbjct: 217 ALAEFAKAGLREP 229
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 51 ENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLP 230
++ F ++NL + AI + PTPIQ T+P+ L G DV +++P
Sbjct: 26 KSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIP 85
Query: 231 ILERL-LYKAKGGDR 272
+LE+L + +GG R
Sbjct: 86 MLEKLKQHVPQGGVR 100
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 86.6 bits (205), Expect = 2e-17
Identities = 54/133 (40%), Positives = 70/133 (52%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P LVL PTREL +V ++ A + + Q+S L + D+V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTI--QQSALTRGVDVVVGTPGR 238
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEX 636
+ID I S L +E LVLDEAD+ML F E ++ I+ KRQ+MLFSATM
Sbjct: 239 IIDLIEGR-SLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWV 297
Query: 637 KDLAAVSLXKPSN 675
K LA L P N
Sbjct: 298 KKLARKYLDNPLN 310
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = +3
Query: 9 EYDSDFFEEPPPYDENASFYNMNLSRP--LMKAIGSLNFVHPTPIQAATIPIALLGKDVX 182
EYD D D+ LS P L +++ H PIQ A + AL G+D+
Sbjct: 84 EYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDII 143
Query: 183 XXXXXXXXXXXXYMLPILERLLYKA 257
+ +PI++RL +A
Sbjct: 144 ARAKTGTGKTLAFGIPIIKRLTEEA 168
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 86.2 bits (204), Expect = 3e-17
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 262 EGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVI 441
E P LV+ PTREL ++H+ R+ ++ V Q S L++ +IV+
Sbjct: 598 EAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVV 657
Query: 442 ATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
TPGR+ID + + L + LV+DEADRM D F Q+ II+ P+RQT+LFS
Sbjct: 658 CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFS 717
Query: 616 ATMXEEXKDLAAVSLXKP 669
AT + + LA L KP
Sbjct: 718 ATFPRQVETLARKVLNKP 735
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 242
++ L+ ++ + LN+ P PIQ +PI + G+D ++LP+L
Sbjct: 531 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 590
Query: 243 L 245
+
Sbjct: 591 I 591
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 85.8 bits (203), Expect = 3e-17
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXD-VKYQESVLRQNP-DIVIATPGRL 459
LV+ PTREL + L ++ + ++ ++ NP I++ATPGRL
Sbjct: 134 LVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRL 193
Query: 460 IDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEE 633
DHI NTP F L ++VLVLDEAD +LD F + ++ II +RQT LFSAT+ EE
Sbjct: 194 KDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEE 253
Query: 634 XKDLAAVSLXK 666
+ + V+L +
Sbjct: 254 VRQICLVALRR 264
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 45 YDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYM 224
Y F + LS +KAI + T +Q AT+PI L GKDV ++
Sbjct: 50 YLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFL 109
Query: 225 LPILE 239
LP +E
Sbjct: 110 LPSIE 114
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/132 (36%), Positives = 69/132 (52%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P LVL PTREL ++ + + Q + + DIV+ATPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEX 636
L D I LH + LVLDEADRMLD F Q+++I+ + KRQT++++AT +E
Sbjct: 362 LND-ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 420
Query: 637 KDLAAVSLXKPS 672
+ +AA L P+
Sbjct: 421 RKIAADLLVNPA 432
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 ASFYNMNLSRPLM-KAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLP 230
A+ +N L P + + S F P+PIQA + PIA+ +D+ Y++P
Sbjct: 228 AAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIP 286
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 83.4 bits (197), Expect = 2e-16
Identities = 55/143 (38%), Positives = 72/143 (50%)
Frame = +1
Query: 241 VSCTRRKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 420
VS R P L+L PTREL ++ +R+ Q LR
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286
Query: 421 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQ 600
+ +IVIATPGRLID + + L + LVLDEADRMLD F Q+++I+ Q P RQ
Sbjct: 287 RGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 601 TMLFSATMXEEXKDLAAVSLXKP 669
T+L+SAT E + LA L P
Sbjct: 346 TLLWSATWPREVETLARQFLRDP 368
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
F + N +++AI L F PTPIQA P+AL G+D+ Y+LP L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 83.4 bits (197), Expect = 2e-16
Identities = 55/143 (38%), Positives = 72/143 (50%)
Frame = +1
Query: 241 VSCTRRKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 420
VS R P L+L PTREL ++ +R+ Q LR
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286
Query: 421 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQ 600
+ +IVIATPGRLID + + L + LVLDEADRMLD F Q+++I+ Q P RQ
Sbjct: 287 RGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 601 TMLFSATMXEEXKDLAAVSLXKP 669
T+L+SAT E + LA L P
Sbjct: 346 TLLWSATWPREVETLARQFLRDP 368
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
F + N +++AI L F PTPIQA P+AL G+D+ Y+LP L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 83.4 bits (197), Expect = 2e-16
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXD-VKYQESVLRQNP-DIVIATPGRL 459
LV+ PTREL ++ A L ++ + ++ ++ NP I++ATPGRL
Sbjct: 462 LVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRL 521
Query: 460 IDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEE 633
DHI NT F L ++VLVLDEAD +LD F ++ II +RQT LFSAT+ EE
Sbjct: 522 KDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEE 581
Query: 634 XKDLAAVSLXK 666
+ + V+L +
Sbjct: 582 VRQICHVALKR 592
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/81 (32%), Positives = 36/81 (44%)
Frame = +3
Query: 45 YDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYM 224
Y F LS +KAI F T +Q AT+PI L GKDV ++
Sbjct: 378 YLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFL 437
Query: 225 LPILERLLYKAKGGDRITRXP 287
LP +E ++ K+ R +R P
Sbjct: 438 LPAIEAVI-KSPPASRDSRQP 457
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 83.4 bits (197), Expect = 2e-16
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 262 EGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVI 441
E P LV+ PTREL ++++ R+ ++ V Q S L++ +IV+
Sbjct: 465 EAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVV 524
Query: 442 ATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
TPGR+ID + + L + LV+DEADRM D F Q+ I++ P RQT+LFS
Sbjct: 525 CTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 584
Query: 616 ATMXEEXKDLAAVSLXKP 669
AT + + LA L KP
Sbjct: 585 ATFPRQVETLARKVLNKP 602
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 242
++ L+ ++ + LN+ P PIQA +PI + G+D ++LP+L
Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 457
Query: 243 L 245
+
Sbjct: 458 I 458
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 83.0 bits (196), Expect = 2e-16
Identities = 46/138 (33%), Positives = 70/138 (50%)
Frame = +1
Query: 256 RKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDI 435
R + P L+L PTREL ++ + + Q L + DI
Sbjct: 501 RNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADI 560
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
V+ATPGRL D I + +LVLDEADRMLD F Q+++I+ + P+RQT++++
Sbjct: 561 VVATPGRLND-ILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 619
Query: 616 ATMXEEXKDLAAVSLXKP 669
AT +E + +A+ L P
Sbjct: 620 ATWPKEVRKIASDLLVNP 637
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
P PY +F + L +++ + S F PTPIQA T PIAL +D+
Sbjct: 431 PAPY---ITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL 487
Query: 216 XYMLP 230
Y++P
Sbjct: 488 GYLIP 492
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 80.6 bits (190), Expect = 1e-15
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXD-VKYQESVLRQNP-DIVIATPGRL 459
LV+ PTREL + A L ++ + ++ L+++P I++ATPGRL
Sbjct: 160 LVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRL 219
Query: 460 IDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEE 633
DHI NT F L ++VLVLDEAD +LD F +++ II +RQT LFSAT+ +E
Sbjct: 220 KDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDE 279
Query: 634 XKDLAAVSLXK 666
+ + V+L +
Sbjct: 280 VRQICHVALKR 290
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +3
Query: 45 YDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYM 224
Y F LS +K I F T +Q AT+P+ L GKD+ ++
Sbjct: 76 YLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFL 135
Query: 225 LPILERLLYKAKGGDRITRXP 287
LP +E ++ KA R R P
Sbjct: 136 LPSIEAVI-KAPPASRDNRHP 155
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.4 bits (187), Expect = 3e-15
Identities = 49/139 (35%), Positives = 70/139 (50%)
Frame = +1
Query: 256 RKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDI 435
R + P LVL PTREL ++ + + Q L + DI
Sbjct: 224 RNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADI 283
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
V+ATPGRL D I L I LVLDEADRMLD F Q+++I+++ KRQT++++
Sbjct: 284 VVATPGRLND-ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342
Query: 616 ATMXEEXKDLAAVSLXKPS 672
AT + + +AA L P+
Sbjct: 343 ATWPKGVRKIAADLLVNPA 361
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP SF L++ + S F PTPIQA + PIA+ G+D+
Sbjct: 154 PPPL---MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 216 XYMLP 230
Y++P
Sbjct: 211 GYLIP 215
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.4 bits (187), Expect = 3e-15
Identities = 49/139 (35%), Positives = 70/139 (50%)
Frame = +1
Query: 256 RKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDI 435
R + P LVL PTREL ++ + + Q L + DI
Sbjct: 224 RNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADI 283
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
V+ATPGRL D I L I LVLDEADRMLD F Q+++I+++ KRQT++++
Sbjct: 284 VVATPGRLND-ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342
Query: 616 ATMXEEXKDLAAVSLXKPS 672
AT + + +AA L P+
Sbjct: 343 ATWPKGVRKIAADLLVNPA 361
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP SF L++ + S F PTPIQA + PIA+ G+D+
Sbjct: 154 PPPL---MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 216 XYMLP 230
Y++P
Sbjct: 211 GYLIP 215
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 79.4 bits (187), Expect = 3e-15
Identities = 49/139 (35%), Positives = 70/139 (50%)
Frame = +1
Query: 256 RKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDI 435
R + P LVL PTREL ++ + + Q L + DI
Sbjct: 224 RNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADI 283
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
V+ATPGRL D I L I LVLDEADRMLD F Q+++I+++ KRQT++++
Sbjct: 284 VVATPGRLND-ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342
Query: 616 ATMXEEXKDLAAVSLXKPS 672
AT + + +AA L P+
Sbjct: 343 ATWPKGVRKIAADLLVNPA 361
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP SF L++ + S F PTPIQA + PIA+ G+D+
Sbjct: 154 PPPL---MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 216 XYMLP 230
Y++P
Sbjct: 211 GYLIP 215
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 78.6 bits (185), Expect = 5e-15
Identities = 43/128 (33%), Positives = 66/128 (51%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
LVL PTREL ++ V R L + V+ + +L+ +V+ TPGR+ D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
++ S +I++ VLDEAD ML F +Q+ +I + PK Q +FSATM E ++
Sbjct: 171 MLKRQ-SLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 646 AAVSLXKP 669
+ KP
Sbjct: 230 TRKFMSKP 237
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 78.2 bits (184), Expect = 7e-15
Identities = 44/128 (34%), Positives = 65/128 (50%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
LVL PTREL ++ V R L + V+ + +L+ +V+ TPGR+ D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+R S I++ VLDEAD ML F +Q+ +I + PK Q +FSATM E ++
Sbjct: 171 MLRRQ-SLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 646 AAVSLXKP 669
+ KP
Sbjct: 230 TRKFMSKP 237
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 77.8 bits (183), Expect = 9e-15
Identities = 48/131 (36%), Positives = 67/131 (51%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P LVL PTREL ++ + Q L++ +IVIATPGR
Sbjct: 173 PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGR 232
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEX 636
LID + + + L + LVLDEADRMLD F Q+++I+ P RQT+ +SAT +E
Sbjct: 233 LIDMMESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEV 291
Query: 637 KDLAAVSLXKP 669
+ L+ L P
Sbjct: 292 EQLSKKFLYNP 302
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
SF ++ +++ + F PTPIQ+ P+A+ G+D+ Y+LP +
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 77.0 bits (181), Expect = 2e-14
Identities = 44/128 (34%), Positives = 65/128 (50%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
LVL PTREL ++ V R L + V+ + VL+ +V+ TPGR+ D
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFD 172
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+R S +I++ VLDEAD ML F +Q+ +I + K Q +FSATM E ++
Sbjct: 173 LLRR-QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEI 231
Query: 646 AAVSLXKP 669
+ KP
Sbjct: 232 TRKFMNKP 239
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Frame = +1
Query: 259 KEGTG-SPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDI 435
K G G +P LVL PTREL +V R+ A + +E L D+
Sbjct: 184 KHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRE--LNYGIDV 241
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
+ TPGR+ID ++ + L ++ +VLDEAD+ML FAE ++ I+++ KRQ+M+FS
Sbjct: 242 AVGTPGRIIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFS 300
Query: 616 ATMXEEXKDLAAVSLXKP 669
ATM + L L P
Sbjct: 301 ATMPSWIRSLTKKYLNNP 318
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 76.2 bits (179), Expect = 3e-14
Identities = 49/139 (35%), Positives = 71/139 (51%)
Frame = +1
Query: 253 RRKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPD 432
+R EG P ++ PTREL ++ ++ ++ Q L+ +
Sbjct: 297 QRDEG---PIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCE 353
Query: 433 IVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLF 612
IV+ATPGRLID ++ + + LVLDEADRM D F Q++ I+ Q P RQT+LF
Sbjct: 354 IVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLF 412
Query: 613 SATMXEEXKDLAAVSLXKP 669
SATM + + LA L P
Sbjct: 413 SATMPWKVEKLAREILSDP 431
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
+F + S +M AI + PT IQ +PI L G+DV ++LP++
Sbjct: 229 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
Query: 240 RLL 248
++
Sbjct: 289 HIM 291
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 76.2 bits (179), Expect = 3e-14
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN-PDIVIATPGRLI 462
+++ PTREL A++H V R + +V+ + L + +++I TPGRL
Sbjct: 95 VIISPTRELSAQIHKVARAVR-------LDFAKCREVEADMNTLEEEGANLLIGTPGRLS 147
Query: 463 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKD 642
D ++ ++E+L+LDEADR+LD F +Q+ II + +R+T LFSAT + D
Sbjct: 148 DMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVAD 207
Query: 643 LAAVSLXKP 669
LA L P
Sbjct: 208 LAKAGLRNP 216
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +3
Query: 30 EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXX 209
E PP + E LS +++A+ F TP+QA TIP KDV
Sbjct: 12 EAPPRFSE----LKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGK 67
Query: 210 XXXYMLPILE 239
++LP +E
Sbjct: 68 TLAFLLPFIE 77
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 75.8 bits (178), Expect = 4e-14
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Frame = +1
Query: 256 RKEGTGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDI 435
R T P ++L PTREL +++H ++ + + Q L + DI
Sbjct: 231 RGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDI 290
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS--PK--RQT 603
++ATPGRL D + + I L LDEADRMLD F Q+++I+ Q P+ RQT
Sbjct: 291 LVATPGRLNDLLERA-RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 349
Query: 604 MLFSATMXEEXKDLAA 651
+LFSAT E + LAA
Sbjct: 350 LLFSATFPREIQRLAA 365
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP + +F ++L L I +V PTP+Q IPI L G+D+
Sbjct: 155 PPPVN---TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTA 211
Query: 216 XYMLPILERLL 248
+ PI+ ++
Sbjct: 212 AFCFPIISGIM 222
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 75.4 bits (177), Expect = 5e-14
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P ++L PTREL ++H R+ + V Q L + DI++ATPGR
Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGR 284
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPK----RQTMLFSATM 624
L D + L + L LDEADRMLD F Q+++I++Q RQTMLFSAT
Sbjct: 285 LNDLLERG-RVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 343
Query: 625 XEEXKDLAA 651
E + LA+
Sbjct: 344 PREIQRLAS 352
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP + +F ++L L I +V PTP+Q IPI G+D+
Sbjct: 142 PPPVN---TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTA 198
Query: 216 XYMLPILERLL 248
+ PI+ ++
Sbjct: 199 AFCFPIISGIM 209
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 74.9 bits (176), Expect = 6e-14
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQ-LAQFXXXXXXXXXXXXDVKYQESVLRQN-PDIVIATPGRL 459
+++ PTREL A++H V ++ +V+ + L + +++I TPGRL
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRL 153
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXK 639
D ++ ++E+L+LDEADR+LD F +Q+ II + +R+T LFSAT +
Sbjct: 154 SDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVA 213
Query: 640 DLAAVSL 660
DLA L
Sbjct: 214 DLAKAGL 220
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 78 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
LS +++A+ F TP+QA TIP KDV ++LP +E
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIE 76
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 74.5 bits (175), Expect = 8e-14
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P ++L PTREL ++H ++ + + Q L + DI++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS--PK--RQTMLFSATM 624
L D + + I L LDEADRMLD F Q+++I+ Q P+ RQTMLFSAT
Sbjct: 290 LNDLLERA-RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATF 348
Query: 625 XEEXKDLAA 651
+ + LAA
Sbjct: 349 PSQIQRLAA 357
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP + +F +++L L I +V PTP+Q IPI L +D+
Sbjct: 147 PPPVN---TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTA 203
Query: 216 XYMLPILERLL 248
+ PI+ ++
Sbjct: 204 AFCFPIISGIM 214
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 74.5 bits (175), Expect = 8e-14
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P ++L PTREL ++H ++ + + Q L + DI++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS--PK--RQTMLFSATM 624
L D + + I L LDEADRMLD F Q+++I+ Q P+ RQTMLFSAT
Sbjct: 290 LNDLLERA-RVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATF 348
Query: 625 XEEXKDLAA 651
+ + LAA
Sbjct: 349 PSQIQRLAA 357
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP + +F +++L L I +V PTP+Q IPI L +D+
Sbjct: 147 PPPVN---TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTA 203
Query: 216 XYMLPILERLL 248
+ PI+ ++
Sbjct: 204 AFCFPIISGIM 214
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +1
Query: 259 KEGTG-SPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDI 435
K G G +P LVL PTREL +V R+ A + Q L D+
Sbjct: 172 KHGRGRNPLCLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRQLDYGVDV 229
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFS 615
+ TPGR+ID ++ + L ++ +VLDEAD+ML FAE ++ I+ + KRQ+M+FS
Sbjct: 230 AVGTPGRVIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 288
Query: 616 ATMXEEXKDLAAVSLXKP 669
ATM + L L P
Sbjct: 289 ATMPSWIRSLTKKYLNNP 306
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 72 MNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL- 248
+ +S ++KA+ S PIQ A + A+ G+D+ + +PI+++++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 249 YKAKGG 266
Y AK G
Sbjct: 169 YNAKHG 174
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 72.9 bits (171), Expect = 3e-13
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Frame = +1
Query: 250 TRRKEGTG-SPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN 426
++RK G G SP LVL+PTREL +V A QE L++
Sbjct: 165 SKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRG 224
Query: 427 PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC--SPKRQ 600
DIV+ TPGR+ DHI + ++ VLDEAD ML F E ++ I+ + S K Q
Sbjct: 225 VDIVVGTPGRIKDHIER-QNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQ 283
Query: 601 TMLFSATMXEEXKDLA 648
T+LFSAT+ K+++
Sbjct: 284 TLLFSATLPSWVKNIS 299
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 78 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL 248
+S PL + + + PIQA+T + L G D+ ++LPILE L+
Sbjct: 103 ISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLV 159
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 72.5 bits (170), Expect = 3e-13
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQL------AQFXXXXXXXXXXXXDVKYQESVLRQNPDIV 438
P L++ P+REL + + V Q A + D++ Q V+++ IV
Sbjct: 223 PIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIV 282
Query: 439 IATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSA 618
+ATPGRL D + L + L LDEADR++D F + ++E+ +RQT+LFSA
Sbjct: 283 VATPGRLKDMLAKK-KMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSA 341
Query: 619 TMXEEXKDLAAVSLXKP 669
TM + + A +L KP
Sbjct: 342 TMPTKIQIFARSALVKP 358
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP +F +M RP++ + V PTPIQ +P+ L G+D+
Sbjct: 142 PPPIK---NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTL 198
Query: 216 XYMLPIL 236
++LP++
Sbjct: 199 VFVLPMI 205
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 72.5 bits (170), Expect = 3e-13
Identities = 47/125 (37%), Positives = 63/125 (50%)
Frame = +1
Query: 274 SPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPG 453
+P LVL PTREL ++ V R+ + Q S +R DIVI TPG
Sbjct: 191 NPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPG 250
Query: 454 RLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEE 633
RL D I + L + +VLDEADRMLD F E ++ I+ + RQ ++FSAT +
Sbjct: 251 RLRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLD 309
Query: 634 XKDLA 648
LA
Sbjct: 310 VHKLA 314
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 72.1 bits (169), Expect = 4e-13
Identities = 46/132 (34%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXD-VKYQESVLRQNP-DIVIATPGRL 459
L+L PTREL +++ A + L +F K + L P I+IATPGRL
Sbjct: 409 LILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRL 468
Query: 460 IDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPK-RQTMLFSATMXE 630
+DHI N L ++++ ++DEAD +LD F +++II C P+ RQ++LFSAT+ +
Sbjct: 469 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKII-DCLPRQRQSLLFSATIPK 527
Query: 631 EXKDLAAVSLXK 666
E + ++ + L +
Sbjct: 528 EVRRVSQLVLKR 539
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +3
Query: 15 DSDFFEEPPPYDE--NASFYNMNLSRPL-MKAIGSLNFVHPTPIQAATIPIALLGKDVXX 185
D+ E+ P+D +A ++ + PL +KA+ + + T +Q AT+ L GKD
Sbjct: 311 DNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALV 370
Query: 186 XXXXXXXXXXXYMLPILERLLYKAKGGDRITR 281
++LP +E +L G + +
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNK 402
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 71.7 bits (168), Expect = 6e-13
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQ-LAQFXXXXXXXXXXXXDVKYQESVLRQNP-DIVIATPGRL 459
+++ PTREL +++ V + ++ +VK ++ + +++I TPGRL
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXK 639
D + ++E+L+LDEADR+L+ F Q+ II + +R+T LFSAT E +
Sbjct: 154 SDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVE 213
Query: 640 DLAAVSLXKP 669
+LA L P
Sbjct: 214 ELAKAGLRNP 223
Score = 34.7 bits (76), Expect = 0.082
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 78 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 245
LS +++A+ +F TP+QAATIP+ KDV +++P++E L
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL 78
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 71.7 bits (168), Expect = 6e-13
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 17/145 (11%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV-LRQNPDIVIATPGRLI 462
LV+VPTREL +V+ +L + K +E LR+ I+IATPGRL+
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLL 167
Query: 463 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIR-------------QCSPK--- 594
DH++NT SF ++ ++ DEAD +L+ + +++++II+ PK
Sbjct: 168 DHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQ 227
Query: 595 RQTMLFSATMXEEXKDLAAVSLXKP 669
+Q +L SAT+ ++ DLA +SL P
Sbjct: 228 KQNLLLSATLNDKVNDLAKLSLDDP 252
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 54 NASFYNMNLSRPLMKAIGS-LNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLP 230
+ SF ++ L L + + F PT +QA IP+ L G+DV Y+ P
Sbjct: 28 SCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAP 87
Query: 231 ILERL 245
++ L
Sbjct: 88 LIHHL 92
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 70.9 bits (166), Expect = 1e-12
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQ------FXXXXXXXXXXXXDVKYQESVLRQNPDIV 438
P LV+ P+REL + + V Q + D++ Q V+++ IV
Sbjct: 174 PIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIV 233
Query: 439 IATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSA 618
+ATPGRL D I L + +L LDEADR++D F + ++ + +RQT+LFSA
Sbjct: 234 VATPGRLKD-ILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSA 292
Query: 619 TMXEEXKDLAAVSLXKP 669
TM + + A +L KP
Sbjct: 293 TMPAKIQIFATSALVKP 309
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 30 EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXX 209
E+ PP +N F +M PL++ + +HPTPIQ +P+ L G+D+
Sbjct: 90 EDIPPPIKN--FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 147
Query: 210 XXXYMLPIL 236
++LP++
Sbjct: 148 TLVFVLPMI 156
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 69.7 bits (163), Expect = 2e-12
Identities = 49/130 (37%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
LV+ PTREL ++ + L D+ Q L P IVI TPGR+
Sbjct: 130 LVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKV 189
Query: 466 HIRNTPSFG--LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPK-RQTMLFSATMXEEX 636
+ N P + LVLDEADR+LD F ++++ I QC PK RQT+LFSATM
Sbjct: 190 LLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIF-QCLPKSRQTLLFSATMTSNL 248
Query: 637 KDLAAVSLXK 666
+ L S K
Sbjct: 249 QALLEHSSNK 258
Score = 35.9 bits (79), Expect = 0.035
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 27 FEEPPPYDENAS---FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXX 197
F P P + S F + L+ ++ L PTP+Q +P L G+DV
Sbjct: 45 FTNPNPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQT 104
Query: 198 XXXXXXXYMLPILERL 245
+ LPIL RL
Sbjct: 105 GSGKTAAFALPILHRL 120
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 67.7 bits (158), Expect = 9e-12
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQ-FXXXXXXXXXXXXDVKYQESVLRQNP-DIVIATPGRL 459
L+L PTREL +++ A + L + + + L P I+IATPGRL
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 460 IDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPK-RQTMLFSATMXE 630
+DHI N L ++++ ++DEAD +LD F +++II C P+ RQ++LFSAT+ +
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKII-DCLPRQRQSLLFSATIPK 574
Query: 631 EXKDLAAVSLXK 666
E + ++ + L +
Sbjct: 575 EVRRVSQLVLKR 586
Score = 31.9 bits (69), Expect = 0.58
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 15 DSDFFEEPPPYDE--NASFYNMNLSRPL-MKAIGSLNFVHPTPIQAATIPIALLGKDVXX 185
D+ E+ P+D +A ++ + PL +KA+ + V T +Q AT+ L GKD
Sbjct: 358 DNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALV 417
Query: 186 XXXXXXXXXXXYMLPILERLLYKAKGG 266
++LP +E +L G
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSG 444
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.9 bits (146), Expect = 3e-10
Identities = 37/128 (28%), Positives = 63/128 (49%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
++LVPTREL + V ++L+++ ++ L Q +++ TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+ L +LV+DEAD++L F ++E+I+ RQ ++FSAT K
Sbjct: 256 LTKKGVCV-LKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 646 AAVSLXKP 669
L KP
Sbjct: 315 KDRHLRKP 322
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 242
F + L R L+K I F P+PIQ +IPIAL G D+ + +P+LE+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 243 L 245
+
Sbjct: 186 I 186
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 62.9 bits (146), Expect = 3e-10
Identities = 37/128 (28%), Positives = 63/128 (49%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
++LVPTREL + V ++L+++ ++ L Q +++ TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+ L +LV+DEAD++L F ++E+I+ RQ ++FSAT K
Sbjct: 256 LTKKGVCV-LKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAF 314
Query: 646 AAVSLXKP 669
L KP
Sbjct: 315 KDRHLRKP 322
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 63 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 242
F + L R L+K I F P+PIQ +IPIAL G D+ + +P+LE+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 243 L 245
+
Sbjct: 186 I 186
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 61.7 bits (143), Expect = 6e-10
Identities = 37/128 (28%), Positives = 63/128 (49%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
++LVPTREL + V ++L+++ ++ L Q +++ TPGR++D
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD 285
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+ L +LV+DEAD++L F ++E+I+ RQ ++FSAT K
Sbjct: 286 LAKKGVCV-LKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSF 344
Query: 646 AAVSLXKP 669
L KP
Sbjct: 345 KDRYLKKP 352
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +3
Query: 15 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 194
D+ + E + F + L R L++ I F P+PIQ +IPIAL G D+
Sbjct: 140 DNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAK 199
Query: 195 XXXXXXXXYMLPILERL 245
+ +P LE++
Sbjct: 200 NGTGKTGAFCIPTLEKI 216
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 1e-09
Identities = 37/128 (28%), Positives = 60/128 (46%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
+++VPTREL + V ++L + +K L Q +++ TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+ L VLV+DEAD++L + F ++ +I RQ ++FSAT KD
Sbjct: 263 LTKKGVCV-LKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 646 AAVSLXKP 669
L P
Sbjct: 322 KDRFLTNP 329
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +3
Query: 15 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 194
D+ + E + F + L R L+ I F P+PIQ +IPIAL G+D+
Sbjct: 117 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
Query: 195 XXXXXXXXYMLPILERL 245
+ +P+LE++
Sbjct: 177 NGTGKTAAFCIPVLEKI 193
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.9 bits (141), Expect = 1e-09
Identities = 37/128 (28%), Positives = 60/128 (46%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
+++VPTREL + V ++L + +K L Q +++ TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
+ L VLV+DEAD++L + F ++ +I RQ ++FSAT KD
Sbjct: 263 LTKKGVCV-LKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDF 321
Query: 646 AAVSLXKP 669
L P
Sbjct: 322 KDRFLTNP 329
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +3
Query: 15 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 194
D+ + E + F + L R L+ I F P+PIQ +IPIAL G+D+
Sbjct: 117 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
Query: 195 XXXXXXXXYMLPILERL 245
+ +P+LE++
Sbjct: 177 NGTGKTAAFCIPVLEKI 193
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/128 (28%), Positives = 58/128 (45%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L+L PTREL + + + V L +V TPGR+ D
Sbjct: 107 LILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD 166
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
I+ S +I++L+LDE+D ML F +Q+ ++ R P Q L SAT+ E ++
Sbjct: 167 MIKRR-SLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225
Query: 646 AAVSLXKP 669
+ + +P
Sbjct: 226 TSKFMTEP 233
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGR 456
P +VL PTREL +V+ V + ++ ++ QE L D+V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 457 LIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR--------QTMLF 612
++ HI + I LVLDEAD M D F ++++ + + + QT+L
Sbjct: 250 ILQHIEE-GNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLV 308
Query: 613 SATM 624
+ATM
Sbjct: 309 TATM 312
Score = 35.1 bits (77), Expect = 0.062
Identities = 24/78 (30%), Positives = 34/78 (43%)
Frame = +3
Query: 6 VEYDSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXX 185
VE +S ++ EN F + LS +M A+ LN PT IQ IP + K V
Sbjct: 97 VEEESSIRKKSKKLVEN--FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVL 154
Query: 186 XXXXXXXXXXXYMLPILE 239
Y+LPI++
Sbjct: 155 GSHTGSGKTLAYLLPIVQ 172
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 59.7 bits (138), Expect = 3e-09
Identities = 41/131 (31%), Positives = 67/131 (51%)
Frame = +1
Query: 274 SPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPG 453
+P +VL PTREL +V + L + + Q ++Q +++I TPG
Sbjct: 186 NPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPG 245
Query: 454 RLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEE 633
R++D + + + L +I VLDE D ML F +Q+ +I + S + Q +LFSAT+ E
Sbjct: 246 RVVD-LLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISRE 303
Query: 634 XKDLAAVSLXK 666
+ + SL K
Sbjct: 304 VEKVGG-SLAK 313
Score = 34.7 bits (76), Expect = 0.082
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 36 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 215
PPP +F + L L+ + + + PTPIQ IP AL GK +
Sbjct: 106 PPPV---LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTA 162
Query: 216 XYMLPILER 242
+++PI+ R
Sbjct: 163 SFLVPIISR 171
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 59.7 bits (138), Expect = 3e-09
Identities = 41/131 (31%), Positives = 67/131 (51%)
Frame = +1
Query: 274 SPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPG 453
+P +VL PTREL +V + L + + Q ++Q +++I TPG
Sbjct: 49 NPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPG 108
Query: 454 RLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEE 633
R++D + + + L +I VLDE D ML F +Q+ +I + S + Q +LFSAT+ E
Sbjct: 109 RVVD-LLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISRE 166
Query: 634 XKDLAAVSLXK 666
+ + SL K
Sbjct: 167 VEKVGG-SLAK 176
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 59.7 bits (138), Expect = 3e-09
Identities = 35/103 (33%), Positives = 53/103 (51%)
Frame = +1
Query: 268 TGSPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIAT 447
T P +V+ PTREL ++ T + A + ++ Q + Q +IVIAT
Sbjct: 387 TEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIAT 446
Query: 448 PGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII 576
PGRLID + + L+ +VLDEADRM+D F Q+ ++
Sbjct: 447 PGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVAGVL 488
Score = 35.5 bits (78), Expect = 0.047
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 236
S+ L+ L+KA+ + P+PIQ A IP+ L +DV ++LP+L
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 54.8 bits (126), Expect = 7e-08
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +1
Query: 430 DIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIR 579
DI++ATPGRL+DHI NT F L + LV+DE DR+L E + + +++
Sbjct: 167 DILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQ 216
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Frame = +1
Query: 271 GSPGXLVLVPTRELGARV-HAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN-PDIVIA 444
G LVL TREL ++ + R ++K + +L+ P IV+
Sbjct: 113 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 445 TPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFSAT 621
TPGR++ R L ++ +LDE D+ML+ ++EI + +Q M+FSAT
Sbjct: 173 TPGRVLALAREK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
Query: 622 MXEEXKDLAAVSLXKP 669
+ +E + + + P
Sbjct: 232 LSKEIRPVCKKFMQDP 247
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 54 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 233
++ F + L L++AI F HP+ +Q IP A+LG DV ++L
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 234 LERL 245
L+++
Sbjct: 105 LQQI 108
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Frame = +1
Query: 271 GSPGXLVLVPTRELGARV-HAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN-PDIVIA 444
G LVL TREL ++ + R ++K + +L+ P IV+
Sbjct: 30 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 89
Query: 445 TPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFSAT 621
TPGR++ R L ++ +LDE D+ML+ ++EI + +Q M+FSAT
Sbjct: 90 TPGRVLALAREK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 148
Query: 622 MXEEXKDLAAVSLXKP 669
+ +E + + + P
Sbjct: 149 LSKEIRPVCKKFMQDP 164
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Frame = +1
Query: 271 GSPGXLVLVPTRELGARV-HAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN-PDIVIA 444
G LVL TREL ++ + R ++K + +L+ P IV+
Sbjct: 113 GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVG 172
Query: 445 TPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFSAT 621
TPGR++ R L ++ +LDE D+ML+ ++EI + +Q M+FSAT
Sbjct: 173 TPGRVLALAREK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
Query: 622 MXEEXKDLAAVSLXKP 669
+ +E + + + P
Sbjct: 232 LSKEIRPVCKKFMQDP 247
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 54 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 233
++ F + L L++AI F HP+ +Q IP A+LG DV ++L
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 234 LERL 245
L+++
Sbjct: 105 LQQI 108
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 52.4 bits (120), Expect = 4e-07
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Frame = +1
Query: 259 KEGTGSPGXLVLVPTRELGARVHAVTRQLAQF-XXXXXXXXXXXXDVKYQESVLRQNPDI 435
K G P +VLVPT EL ++V A R +++ + Q L Q D+
Sbjct: 446 KSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDV 505
Query: 436 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRML-DEYFAEQMKEIIRQCSPKRQTMLF 612
+IATPGR ++ N GL ++ +LDE D + D+ F ++ +I Q +
Sbjct: 506 LIATPGR-FTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFV 564
Query: 613 SATMXEE 633
+AT+ E
Sbjct: 565 TATLPLE 571
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
+F + S +MKA+ NF P IQA + GK Y++P+++
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 240 RL 245
RL
Sbjct: 435 RL 436
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 52.0 bits (119), Expect = 5e-07
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
L++ PTREL +V A+ + QE L++ P+IV+ATPGRL +
Sbjct: 283 LIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWE 342
Query: 466 HIR--NTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII 576
+ LHS+ VLDEADRM++ +++ I+
Sbjct: 343 LMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSIL 381
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 30 EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALL-GKDVXXXXXXXXX 206
EE PP E +++ +M L LMK+I L+F PT IQ A +A GKDV
Sbjct: 183 EEIPP--EFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSG 240
Query: 207 XXXXYMLPILERLL 248
+ LPIL+RLL
Sbjct: 241 KTLAFGLPILQRLL 254
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 51.2 bits (117), Expect = 9e-07
Identities = 33/128 (25%), Positives = 57/128 (44%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 465
LVL P+REL ++ + + + L + V TPGR+ D
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYD 153
Query: 466 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMXEEXKDL 645
I+ S ++++LVLDE+D ML + +Q+ ++ R Q L SAT+ +E ++
Sbjct: 154 MIKRG-SLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEM 212
Query: 646 AAVSLXKP 669
+ P
Sbjct: 213 TEKFMTDP 220
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 50.4 bits (115), Expect = 2e-06
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Frame = +1
Query: 277 PGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNP---DIVIAT 447
P L + PTREL + V +++ +F + + R P +VI T
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPD-STRGAPAATRGAPVSAHVVIGT 221
Query: 448 PGRLIDHIRNTPSFGLHSIEVLVLDEADRML--DEYFAEQMKEI--IRQCSPKRQTMLFS 615
PG L + GL+ +++LV DEAD ML D + + +K + I + +P Q +LFS
Sbjct: 222 PGTLKKWMA-FKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFS 280
Query: 616 ATMXEEXKDLAAVSLXKPS 672
AT E KD A ++ P+
Sbjct: 281 ATFNETVKDFVARTVKDPN 299
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 42 PYDENASFYNMNLSRPLMKAI-GSLNFVHPTPIQAATIPIAL 164
PY + F ++NLS LMK + + F P+ IQA ++P+ +
Sbjct: 86 PYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIM 127
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +1
Query: 430 DIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS-PKRQTM 606
D++I+TP RL I+ L +E LVLDE+D++ ++ +Q+ +++ CS P
Sbjct: 260 DVLISTPMRLKRAIK-AKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRS 318
Query: 607 LFSATMXEEXKDLA 648
LFSAT+ + ++LA
Sbjct: 319 LFSATLPDSVEELA 332
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 36 PPPYDENASFYNM-NLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXX 212
PPP A + +++ + L F PTPIQ IPI L G++
Sbjct: 133 PPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKT 192
Query: 213 XXYMLPILERLLYKAKGGDR 272
++ P+L +L + G R
Sbjct: 193 FAFICPMLIKLKRPSTDGIR 212
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 46.4 bits (105), Expect = 3e-05
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = +1
Query: 286 LVLVPTRELGAR-VHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN-PDIVIATPGRL 459
+++ P+RELG + V V + L + QE L++N P IV+ TPGR+
Sbjct: 195 MIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRI 254
Query: 460 IDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII 576
+ I H LVLDE D +L F E + I+
Sbjct: 255 AE-ISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRIL 292
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 60 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 239
SF + L L+ ++ F PT +Q+A +P + G D Y+LPIL
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 240 RL 245
+
Sbjct: 171 EI 172
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Frame = +1
Query: 274 SPGXLVLVPTRELGARVHAVTRQLAQFXXXXXXXXXXXXDVKYQE--SVLRQNPDIVIAT 447
+P +LVP+REL +V+ L + + + + L P+I+++T
Sbjct: 120 APSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVST 179
Query: 448 PGRLIDHIRN---TPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSA 618
P + P+ S+ +LVLDEAD +L + + ++ + + Q +L SA
Sbjct: 180 PACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSA 239
Query: 619 TMXEEXKDLAAVSLXKP 669
T + + L + L P
Sbjct: 240 TTSSDVEKLKKLILHNP 256
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = +3
Query: 15 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 194
D + EE + SF + L L++A+ PT IQ + IP L GKDV
Sbjct: 32 DREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91
Query: 195 XXXXXXXXYMLPILERL 245
Y+LP+L++L
Sbjct: 92 TGSGKTLAYLLPLLQKL 108
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Frame = +1
Query: 286 LVLVPTRELGARVHAVTRQLA-----QFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATP 450
+++VPTRELG +V V R LA ++ +S L+ P ++
Sbjct: 148 VIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVAT 207
Query: 451 GRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ---MKEIIRQCS--PKRQTMLFS 615
+ H+ F + S+ VLV+DE D + Y ++Q +++++ S KRQT+ S
Sbjct: 208 VASLCHMLEKHIFRIDSVRVLVVDEVDFLF--YSSKQVGSVRKLLTSFSSCDKRQTVFAS 265
Query: 616 ATMXE 630
A++ +
Sbjct: 266 ASIPQ 270
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 34.7 bits (76), Expect = 0.082
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 48 DENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYML 227
D S+ ++ LS + A+ F P+ QA IP L GKDV Y+
Sbjct: 77 DHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLA 136
Query: 228 PILERL 245
PI+++L
Sbjct: 137 PIIDQL 142
Score = 34.7 bits (76), Expect = 0.082
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 427 PDIVIATPGRLIDHI---RNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII 576
PDI+++TP L+++I RN L ++ +V DEAD +L F Q+ +I
Sbjct: 210 PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLI 262
>At5g15530.1 68418.m01818 biotin carboxyl carrier protein 2 (BCCP2)
identical to biotin carboxyl carrier protein isoform 2
[Arabidopsis thaliana] gi|8886869|gb|AAF80592
Length = 255
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 386 PPTDRPTDTDEN*ASCLVTAWTRAP--SSLVGTSTRXPGDPVPSFRLVQETLQYGQHVC 216
PP+ PT T + + P S + GT R PG P F V + +Q GQ VC
Sbjct: 156 PPSPTPTSTPATAKPTSAPSSSHPPLKSPMAGTFYRSPGPGEPPFVKVGDKVQKGQIVC 214
>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
identical to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 665
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 258 KGGDRITRXPGTCAN*RTWCSGPCSHKTTG--SVLIGVCGSVCGRIRC*ISGKR 413
KG R+ P + + R W CS +TG S G CGS G+I C SG R
Sbjct: 59 KGESRVINVPPSWSG-RLWGRSFCSTSSTGNFSCATGDCGS--GKIECSDSGAR 109
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +1
Query: 427 PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ---MKEIIRQCS--P 591
P I++AT L H+ F + S+ VLV+DE D + Y ++Q +++++ S
Sbjct: 44 PAILVATVASLC-HMLEKHIFRIDSVRVLVVDEVDFLF--YSSKQVGSVRKLLTSFSSCD 100
Query: 592 KRQTMLFSATMXE 630
KRQT+ SA++ +
Sbjct: 101 KRQTVFASASIPQ 113
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 484 RVCSVCDR*ADPASLSLCRGSDAA 413
RVC VC R DP C+ DAA
Sbjct: 201 RVCEVCRRTGDPNKFMFCKRCDAA 224
>At5g56210.1 68418.m07014 expressed protein ; expression supported
by MPSS
Length = 509
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 215 CIHAAHTGASPVQGERR-GPDHQGSWYLCQLENLVLGSMQSQDN 343
CIHA H GAS R G + G L L++ +L + + ++
Sbjct: 316 CIHAGHEGASEASSSYRFGSEKMGEMELTSLDSEILNLVNNVEH 359
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,327
Number of Sequences: 28952
Number of extensions: 349729
Number of successful extensions: 1131
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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