Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H21
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    63   3e-12
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    61   1e-11
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    60   2e-11
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    59   5e-11
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    59   5e-11
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    46   5e-07
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    28   0.11 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.78 

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 62.9 bits (146), Expect = 3e-12
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
 Frame = +1

Query: 154 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 330
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 331 ERLWRPDVVLLNAAATTA-GDYVLRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 507
            +LW+PDV++ N+A     G +     V +NGS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 508 TFKFGSGMHNSDEMDFVID 564
             KFGS  ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 61.3 bits (142), Expect = 1e-11
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
 Frame = +1

Query: 154 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 330
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 331 ERLWRPDVVLLNAAATTA-GDYVLRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 507
            +LW+PDV++ N+A     G +     V +NGS  ++      +   + +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142

Query: 508 TFKFGSGMHNSDEMDFVID 564
             KFGS  ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 60.5 bits (140), Expect = 2e-11
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
 Frame = +1

Query: 154 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 330
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 331 ERLWRPDVVLLNAAATTA-GDYVLRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 507
            +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 508 TFKFGSGMHNSDEMDFVID 564
             KFGS  ++ +++D V++
Sbjct: 143 DMKFGSWTYDGNQLDLVLN 161


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +1

Query: 253 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYVLRARVSNNGS 426
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 427 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSGMHNSDEMDFVID 564
             ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +1

Query: 253 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYVLRARVSNNGS 426
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 427 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSGMHNSDEMDFVID 564
             ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 13/152 (8%)
 Frame = +1

Query: 109 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 276
           ++S ++DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W D 
Sbjct: 40  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99

Query: 277 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYVLRARVSNNGSV 429
           RL++     G  T  V SE    +W PD   +N        ATT+ +++   RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155

Query: 430 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 525
           +   RL I+    M L   P D Q C  +  S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 376 TTAGDYVLRARVSNNGSV------SWIKRLDISTPISMQLDNWPND 495
           TT G ++  A  +  G +      SW + ++  + + M LDNW ND
Sbjct: 260 TTFGSFIFNANSAIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -1

Query: 233 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 54
           V S+S       CR     I +    ++  V+    + +DS  AF+      +AQV    
Sbjct: 56  VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115

Query: 53  NKNNISRRHFMTT 15
           N  N + R   TT
Sbjct: 116 NGTNKNMRRLSTT 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,530
Number of Sequences: 336
Number of extensions: 3844
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)