Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H18
         (906 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)                    33   0.42 
SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)                32   0.73 
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.73 
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    32   0.73 
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.73 
SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.9  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               29   5.2  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   5.2  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   5.2  
SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   29   5.2  
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   29   6.8  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_27194| Best HMM Match : C2 (HMM E-Value=1e-22)                      28   9.0  
SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34)                    28   9.0  
SB_15184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_31263| Best HMM Match : TP2 (HMM E-Value=5.5)                       28   9.0  
SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)               28   9.0  

>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
          Length = 170

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 513 SRPYASSHPPL-RSRLHQPDHQIP-DSIHQPPQT*HPFPSIPWTPY 644
           S P  S  P L R RL  P        IH PPQ  HP   +PW P+
Sbjct: 125 STPRPSHIPRLKRRRLQTPTKTTTLPPIHSPPQDQHPGRQLPWDPF 170


>SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)
          Length = 168

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 462 RSQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQP---DHQIPDSIHQPPQT*HPFPSIP 632
           +S C  HP     Y    +P   SHP    R +QP   +H I   ++QP    HP  +IP
Sbjct: 31  QSSCINHPVSTILY----QPSCISHPVSTIR-YQPSRINHPISTILYQPSHINHPVSTIP 85

Query: 633 WTP 641
           + P
Sbjct: 86  YQP 88



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 471 CAGHPFILSHYYWRSRPYASSHPPLRSRLHQP---DHQIPDSIHQPPQT*HPFPSIPWTP 641
           C  HP     Y    +P   +HP + + L+QP   +H +   ++QP    HP  +IP+ P
Sbjct: 90  CINHPVSTIMY----QPPCINHP-VSTTLYQPSCINHPVSTILYQPSCINHPVSTIPYQP 144


>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 519 PYASSHPPL-RSRLHQPDHQIP-DSIHQPPQT*HPFPSIPWTPY 644
           P  S  P L R RL  P        IH PPQ  HP   +PW P+
Sbjct: 87  PRPSRIPRLKRRRLQTPTRTTTLPPIHSPPQDQHPGRQLPWDPF 130


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 414 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLR 548
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PLR
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137


>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = +3

Query: 519 PYASSHPPLRSRLHQPDH---QIPDSIHQPPQT*HPFPSIPWTPY*KGVRAG--GLKPPV 683
           PY S  PP +S  +QP H   Q P   +QPP   +  P   + P  K  +      +PP 
Sbjct: 422 PYKSYQPPHKS--YQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPY 479

Query: 684 VIRGSISVSHPPRSLGMAKXGFRPLYFQVNDEIT 785
                 S   P +S       ++PL+ Q ND+IT
Sbjct: 480 K-----SYQPPYKSYQPPYKSYQPLHQQRNDQIT 508


>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/74 (27%), Positives = 27/74 (36%)
 Frame = +2

Query: 530 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLDAVLKRSSRRGFKASGCHQRLHQRI 709
           +P S    A ST S +  FH       T     P    L   S    ++SG  +R  QR+
Sbjct: 621 RPSSARARANSTDSDDSVFHESANQSETGADTRPRTRTLSGRSAASTESSGLLKRTLQRV 680

Query: 710 SPPSFTGHG*XGXP 751
           +      H   G P
Sbjct: 681 ASADQKVHSATGSP 694


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +3

Query: 474 AGHPFILSHYYWRSRPYASSH------PPLRSRLHQPDHQIPDSIHQ 596
           + HP  + H+  +S P+ SSH      PP +  LH+PD+   +  HQ
Sbjct: 289 SAHPSQVPHH--KSEPHTSSHKPQLWVPPTQQSLHKPDNPHKNPYHQ 333


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 456 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 277
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 276 KIE 268
           + E
Sbjct: 335 EEE 337


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = -1

Query: 591  VWNRGFDDRVDVAEIAGEG----GLMHKGE-TANSNARG*RGGQHIDSFNCD---VSSSP 436
            +W++     +DVAE+AG G    GL  +   TA S   G     HID F C    +S  P
Sbjct: 1545 LWHKDTAGHIDVAEVAGGGATNEGLKKRAAYTAQSVEVGLIVNLHIDIFKCGRYLLSGVP 1604

Query: 435  TKVNCD 418
             K+  +
Sbjct: 1605 MKIRLE 1610


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 394 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 504
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +1

Query: 268 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 375
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 510 RSRPYASSHPPLRSRLHQP---DHQIPDSIHQPPQT*HPFPSIPWTPY 644
           R  P  S   P  +R  +    D  +PD I  PPQ  HP  + PW P+
Sbjct: 121 RRLPMTSDKTPKSTRKEKHVNWDPFLPD-IKSPPQDQHPGKTTPWEPF 167


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
 Frame = +1

Query: 292 KSNSVTVQSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEG 465
           +++ VT Q  P+ S   +  GY D    N+     PS  S  I V  ++ W     T   
Sbjct: 207 EAHIVTEQEAPSCSPEDLAVGYSDGKAHNITWSPIPSNQSNGIIVVYEITWVKVANTTRS 266

Query: 466 VNVLATPSSSRITIGGLALMHQATLPCDLGYINP---IIKSPIPYTNHPRLN 612
              L   SS+  +     L     LPC +  I+     I  P P+T    LN
Sbjct: 267 RRALDAASSANTSSTSYRLTD--LLPCSVYNISVRGYTIAGPGPFTRPLSLN 316


>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 460 EGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIH 618
           E V  + +PS+S +TI G +L   +  P   G  +P + S  P  N P   IH
Sbjct: 560 EVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPPLTSSTPPMN-PSNPIH 611


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTS 616
           P+PA + T T+ + P  HTPTTP  T+
Sbjct: 94  PTPATTPTPTKPT-PTAHTPTTPTPTA 119


>SB_27194| Best HMM Match : C2 (HMM E-Value=1e-22)
          Length = 139

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 566 RSSNPRFHTPTTPDLTSISINPLDAVLKRSSRRGFKASGCHQRLHQRISPPSFTG 730
           ++ NP+F    T DL + S+  LD +    +     ASGCH+R+ Q +   S  G
Sbjct: 62  KTVNPKFAQTFTFDLAADSV--LDMMTMTFTVMVQDASGCHERIGQVVLSASSDG 114


>SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34)
          Length = 108

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +1

Query: 412 IPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPY 591
           +P  + LC +   +++E   + A PS  +I  GG +L+ Q       G++  +  S +PY
Sbjct: 18  LPYELVLCGSLQIMSIENCPLSALPS--QIVAGGPSLVIQ-------GFVFHVSCSWLPY 68

Query: 592 TNHPRLNIHFHQ 627
           ++ PR  I+F +
Sbjct: 69  SSEPRHAINFRE 80


>SB_15184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 524 CIKPPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLD 637
           CIKP S  IS + T   N        PD+  IS I P+D
Sbjct: 57  CIKPASSHISDSLTTILNQSLQQGVVPDILKISKITPVD 95


>SB_31263| Best HMM Match : TP2 (HMM E-Value=5.5)
          Length = 177

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 567 DHQIPDSIHQPPQT*HPFPSIPWTPY 644
           D  +PD I  PPQ  HP  + PW P+
Sbjct: 153 DPFLPD-IKSPPQDQHPGETTPWEPF 177


>SB_17488| Best HMM Match : Phi-29_GP3 (HMM E-Value=0.69)
          Length = 250

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 524 CIKPPSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLD 637
           CIKP S  IS + T   N        PD+  IS I P+D
Sbjct: 99  CIKPASSHISDSLTTILNQSLQQGVVPDILKISKITPVD 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,420,283
Number of Sequences: 59808
Number of extensions: 549853
Number of successful extensions: 1702
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)