Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H18
         (906 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    32   0.60 
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    30   2.4  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   5.6  
At1g50090.1 68414.m05619 aminotransferase class IV family protei...    28   7.4  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.8  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    28   9.8  
At1g03530.1 68414.m00334 expressed protein similar to hypothetic...    28   9.8  

>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 483 PFILSHYYWRSRPYASSHPPLRSR---LHQPDHQIPDSIHQPPQT*HPFP 623
           PF +S     +RP+ +S PP  S+   + QP       + QPP T  P P
Sbjct: 488 PFSMSQPSSTARPFPASQPPAASKSFPISQPPTTSKPFVSQPPNTSKPMP 537



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 468 QCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDS-----IHQPPQT*HPFPSIP 632
           Q A +PF +S     S+P++ S P   +R   P  Q P +     I QPP T  PF S P
Sbjct: 471 QPASNPFPVSQPRPNSQPFSMSQPSSTARPF-PASQPPAASKSFPISQPPTTSKPFVSQP 529


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 522 YASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIPWTPY 644
           Y SS P +RS  H P +  P +   PP T +   S P+ PY
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTTVYSNRSPPY-PY 480


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIPWTP 641
           P  S  PP+ S    P H  P  +H PP   H  P   ++P
Sbjct: 576 PVHSPPPPVYSPPPPPVHSPPPPVHSPPPPVHSPPPPVYSP 616


>At1g50090.1 68414.m05619 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 367

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +1

Query: 310 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPS 489
           V+S  N S ++K   +A       V+F  A + K    V  C    ++ +   N+++TP 
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTC----NIFILKGNIVSTPP 256

Query: 490 SSRITIGGLALMHQATLPCDLGY 558
           +S   + G+       L  D+GY
Sbjct: 257 TSGTILPGITRKSICELARDIGY 279


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 313 QSLPNVSSIIKGYRDAY 363
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
           P  S  PP+ S    P H  P  +H PP   H  P
Sbjct: 673 PVYSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 707



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
           P  S  PP+ S    P H  P  +H PP   H  P
Sbjct: 755 PVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 789


>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
           protein GB:O14360
          Length = 797

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 534 HPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIPWTP 641
           HPP +S++H+P  Q+      PPQ   P    P  P
Sbjct: 679 HPP-QSQMHRPQSQMNPQFQMPPQF-QPHQQSPMNP 712


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,734,787
Number of Sequences: 28952
Number of extensions: 411427
Number of successful extensions: 1239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)