Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H17
(887 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 349 1e-96
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.044
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.6
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035) 30 2.9
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.9
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 5.0
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 5.0
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 5.0
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 5.0
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4) 29 6.6
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 29 6.6
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 28 8.8
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 28 8.8
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 349 bits (859), Expect = 1e-96
Identities = 158/215 (73%), Positives = 185/215 (86%)
Frame = +1
Query: 61 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVL 240
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++ WEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 241 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 420
AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 421 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 600
LLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180
Query: 601 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEQ 705
EVLR+RG + R W+++ DL+FYRDPE +EK+EQ
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQ 215
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.044
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 662 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 495
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 494 ITGMLTY 474
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 33.9 bits (74), Expect = 0.18
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Frame = +3
Query: 234 CSGCSCCRSHREPR*CVRHLITALRSACCTEVC--RAHRCYA---YCGTFHTRCFY*PDP 398
CS C R CV I L + C C + H A C H+ C
Sbjct: 822 CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874
Query: 399 SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 545
SCI S+ DCI C+ PS F C+ +C T++C +C+P
Sbjct: 875 SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 507 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 343
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 433 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 528
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Frame = +3
Query: 198 PCDQLASCLGKTCSG-CSCCRSHREPR*CVRHL-ITALRSACCTEVCRAH--RCYAYCGT 365
PC+ CL TC+G C+ C R C T C E C + C C
Sbjct: 1894 PCNAKLKCL-HTCAGNCNSCLQQRVHEQCKSKCDRTLFCGHSCQEPCTKNCPPCQKQCEN 1952
Query: 366 --FHTRCFY*PDPSCIP*TSSLDCIGPCTRPSTHY-*SFICQHSCD 494
H++C C+P C PC HY + +C CD
Sbjct: 1953 KCEHSKCKNRCGEPCVP------CAEPCAWECRHYKCNKLCGEMCD 1992
>SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035)
Length = 396
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 105 HQNACCNHPSWGRKC*LPDGDLCLQ---TTC*WYPCDQLASCLGKTCSGCSCCRSHRE 269
H ++C N G++C +G C++ + C SC G+TC C RS R+
Sbjct: 126 HMSSCSNGCCLGQRC--LNGGTCVEHCEDPKKKFSCACTPSCSGRTCESCGTYRSCRD 181
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 565 HSIGLMWWLLAREVLRLRGVLP 630
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -2
Query: 346 HRCARQTSVQH-ADRRAVMR*RT--HQRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVC 176
H +R S H R R T H+R RQHE+ RH++S H +H
Sbjct: 39 HETSRHESSPHETSRHETSRHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHGRS 97
Query: 175 RHRS 164
RH++
Sbjct: 98 RHKT 101
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 414 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 539
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 507 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 349
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 667 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 548
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -1
Query: 674 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 504
R N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 503 HKAITG 486
+TG
Sbjct: 63 EFTLTG 68
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 507 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 349
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
Length = 158
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 260 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNL 418
PSRTPL ++ +G +S+ Y VLR+ R H ++ ++R L ++N+
Sbjct: 49 PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 623 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 501
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/77 (25%), Positives = 29/77 (37%)
Frame = +3
Query: 216 SCLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCGTFHTRCFY*PD 395
SC TC G +C + + C + + +A S C + C C YC C
Sbjct: 205 SCPNMTCGGTNCTQKCGKD--CQQVVCSA--SGKCDQSCDGEGCNLYCSEGAKTCNQKCQ 260
Query: 396 PSCIP*TSSLDCIGPCT 446
+C+ S C CT
Sbjct: 261 GACVTDCKSRWCGVTCT 277
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 28.7 bits (61), Expect = 6.6
Identities = 29/103 (28%), Positives = 36/103 (34%), Gaps = 10/103 (9%)
Frame = +3
Query: 102 CHQNACCNHPSWGRKC*LP---DGDLCLQTT--C*WYPCDQLASCLGKTCSGCSCCRSHR 266
C+ NA C + C P G LC C PC ASC C +
Sbjct: 566 CYGNATCLDGANNYTCICPRGFTGTLCDVNVDECEDSPCANGASCEDLINDFRCHCPAGF 625
Query: 267 EPR*CVRHLITALRSAC-----CTEVCRAHRCYAYCGTFHTRC 380
+ R C + S C CT+V +RC G TRC
Sbjct: 626 QGRTCAVDINECATSPCLNEAKCTDVVSGYRCTCRSGYTGTRC 668
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 409 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 558
RE R +++ +D A H P + +Y NI +I L NT S + +D I N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 672 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 526
V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,382,071
Number of Sequences: 59808
Number of extensions: 639096
Number of successful extensions: 1588
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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