Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H16
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.45 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.45 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.4  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   3.1  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   4.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   7.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 625 WKWMLSLGWLVYGIGDLMI 569
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 625 WKWMLSLGWLVYGIGDLMI 569
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 47  SAASAIPSLVNAFSSSKPPQTDNPSAR 127
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 299 SIWFRCQ*DRSTGVEKG*SNVEETVPG 219
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 299 SIWFRCQ*DRSTGVEKG*SNVEETVPG 219
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 RTSPPS*KATATRILSILRLSFFLPPLASK 413
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 250 RSSPTTATAIASATVTIQNVSNTIPPFASR 279


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 RTSPPS*KATATRILSILRLSFFLPPLASK 413
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 198 RSSPTTATAIASATVTIQNVSNTIPPFASR 227


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 RTSPPS*KATATRILSILRLSFFLPPLASK 413
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 381 RSSPTTATAIASATVTIQNVSNTIPPFASR 410


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 714 PSSLGMAKGVSPPYFK*MMNHKLRXL 791
           P+S+G++  VS P FK ++ H+ R +
Sbjct: 21  PNSVGVSNEVSLPQFK-VLGHRQRAM 45


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 714 PSSLGMAKGVSPPYFK*MMNHKLR 785
           P+S+G++  VS P FK ++ H+ R
Sbjct: 203 PNSVGVSSEVSLPQFK-VLGHRRR 225


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 254 FQRLYFDLTGTETKSNS-VTVQSLPNVSSIIKGYRDAYLVNLEAVV 388
           F  L  +L G     N  VT+  LPNV+S +     A   NLE VV
Sbjct: 197 FVSLVRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 526 ASSHPPLAISATSTRSSNP-RFHTPTTPDLTSIS 624
           +S  PP  ISA  T S +P + + P T +LT+++
Sbjct: 328 SSPPPPYQISAQPTPSQSPNQIYQPVT-NLTNLT 360


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 716 GGEIR*WSX**QPEALTPARTPFSTAFRGLMEMDVKSG 603
           GGE+  WS    P++L     P S AF   +  D  +G
Sbjct: 507 GGEVCLWSEQVGPDSLETRIWPRSAAFAERIWSDPSAG 544


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,422
Number of Sequences: 336
Number of extensions: 3721
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)