Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H16
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    31   1.2  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.7  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   4.9  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   4.9  
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)                29   4.9  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                29   4.9  
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               28   8.6  
SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)               28   8.6  

>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 415 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLAI 552
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PL I
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLRI 138


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 457 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 278
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 277 KIE 269
           + E
Sbjct: 335 EEE 337


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 395 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 505
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +2

Query: 269 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 376
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
          Length = 632

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 508 WR-SRPYASSHPPLAISATSTRSSNPRFHTPTTPDLTSI-SINPLNAVLKGVRAGVKASG 681
           WR + P   +   + I+ T    + PRF  P  P +TSI    P    +  V A  + SG
Sbjct: 443 WRPNMPELPAEATVLITVTDINDNAPRFAIPREPLVTSIHQFRPAGTTVTKVTAYDQDSG 502

Query: 682 CH 687
            H
Sbjct: 503 SH 504


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 514 SRPYASSHPPLAISATSTRSSN-PRFHTPTTPDLTSISINP 633
           S P     P   IS TS  SS  PR H PTTP  T  +  P
Sbjct: 249 STPRHHGEPQTTISITSIISSAIPRGHLPTTPSTTPQATPP 289


>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 538

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 523 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 624
           Y  S PPL++ + ST + +P      TP  TSIS
Sbjct: 502 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 535


>SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
          Length = 260

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 523 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 624
           Y  S PPL++ + ST + +P      TP  TSIS
Sbjct: 224 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,687,084
Number of Sequences: 59808
Number of extensions: 498148
Number of successful extensions: 1536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)