Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H12
         (886 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.60 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   1.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   7.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 306  RTPGPSAVGRWRRAARHLAY 365
            + PGP   G + RAA  LAY
Sbjct: 1660 KAPGPGQAGEYTRAAGFLAY 1679



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 315  GPSAVGRWRRAARHLAYAKWRERLLEELGQTSVTR 419
            GP   G + RA   LAY +  ER +++ G T VTR
Sbjct: 2586 GPGEAGEFTRAGGFLAYYEICER-VKKRGWT-VTR 2618


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 134 CSFAATSAAGARGESHQGVPYDLP 205
           C+++A S+A      HQ VPY  P
Sbjct: 148 CNYSAYSSASRHHVDHQPVPYLTP 171


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 126 QRVRATTRERRTKPYCARP 70
           +R RAT  +RR +P   RP
Sbjct: 316 ERPRATDHQRRNEPKRPRP 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,741
Number of Sequences: 336
Number of extensions: 4354
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)