Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H12
(886 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 36 0.044
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_47406| Best HMM Match : RB_A (HMM E-Value=6.4) 31 1.6
SB_15480| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_2912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1) 31 1.6
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 30 2.2
SB_35764| Best HMM Match : RVT_1 (HMM E-Value=8.1e-13) 30 2.9
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_27893| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_45375| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6) 29 3.8
SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20) 29 3.8
SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022) 29 3.8
SB_15624| Best HMM Match : Phage_G (HMM E-Value=9.5) 29 3.8
SB_57671| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.0
SB_53749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.0
SB_17007| Best HMM Match : VWA (HMM E-Value=4.6e-06) 29 5.0
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 29 5.0
SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32) 29 5.0
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 5.0
SB_35779| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_30161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_25515| Best HMM Match : Complex1_LYR (HMM E-Value=9.6) 29 5.0
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 29 5.0
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.0
SB_11114| Best HMM Match : UPF0203 (HMM E-Value=9.6) 29 5.0
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_43617| Best HMM Match : RVT_1 (HMM E-Value=3e-21) 29 6.6
SB_43127| Best HMM Match : DUF1690 (HMM E-Value=2.2) 29 6.6
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 6.6
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 29 6.6
SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9) 29 6.6
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 29 6.6
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 29 6.6
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23) 29 6.6
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 29 6.6
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_8726| Best HMM Match : Pox_F16 (HMM E-Value=5.2) 29 6.6
SB_58751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34) 28 8.7
SB_9033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66) 28 8.7
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 229
Score = 35.9 bits (79), Expect = 0.044
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -2
Query: 702 AMTARKEXSLPPAPR*GLAASAPNAGTLRVHAERHRPDARTGGNPDVALSCRPSTGTSRS 523
A+ AR+ SL P S V+ HRP +T +P AL+C+ T +
Sbjct: 129 ALHARRVLSLSPPSHARRVLSLSPPYMQDVYFTCHRPTCKTCTSPVTALTCKTCTSPVTA 188
Query: 522 NHAPRGPALS-GRRARRVVYLTMPPARA 442
HA R LS ARRV+ L+ PP+ A
Sbjct: 189 LHARRVLHLSPPLHARRVLSLS-PPSHA 215
Score = 34.7 bits (76), Expect = 0.10
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 600 HRPDARTGGNPDVALSCRPSTGTSRSNHAPRGPALS-GRRARRVVYLTMP 454
HRP +T +P AL+C+ T + HA R +LS ARRV+ L+ P
Sbjct: 104 HRPTCKTCTSPVTALTCKTCTSPDTALHARRVLSLSPPSHARRVLSLSPP 153
Score = 29.1 bits (62), Expect = 5.0
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = -2
Query: 600 HRPDARTGGNPDVALSCRPSTGTSRSNHAPRGPALSGRRARRVVYLTMPPARAPGPRGCV 421
HRP +T P +AL+C+ T + HA R LS + V + P C
Sbjct: 45 HRPTCKTCTFPVIALTCKTCTSPVTALHARRVLHLSPPYMQDVYFTCHRPHMQDVYFPCH 104
Query: 420 GE*LKFGQAP-PATAPSTWRTPDDAQHA 340
K +P A T +PD A HA
Sbjct: 105 RPTCKTCTSPVTALTCKTCTSPDTALHA 132
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
LA L N+ CS ++ R Y +VR + YG+ WSP
Sbjct: 691 LAVLQRNLSSCSVRIKERAYTSLVRPILEYGSVAWSP 727
>SB_47406| Best HMM Match : RB_A (HMM E-Value=6.4)
Length = 289
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 15 RLLPNVGGCSAGVRRLYLGVVRSMALYGAPVWS 113
R+L G A + R+Y ++RS+ Y +PVW+
Sbjct: 20 RVLKKAGVHQADLVRIYCSIIRSVMEYASPVWN 52
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 15 RLLPNVGGCSAGVRRLYLGVVRSMALYGAPVWS 113
R+L G A + R+Y ++RS+ Y +PVW+
Sbjct: 175 RVLKKAGVHQADLVRIYCSIIRSVMEYASPVWN 207
>SB_15480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = -2
Query: 516 APRGPALSGRRARRVVYLTMPP-------ARAPGPRGCVGE*LKFGQAPPATAPSTWRTP 358
+PR + GRR ++ LT P ARA PRG Q PP TAP P
Sbjct: 165 SPRARSPRGRRLIKISLLTEPEPDTTVDSARARYPRGHCKS-----QIPPWTAPE----P 215
Query: 357 DDAQHASTDRQPTGR 313
D H++T R P G+
Sbjct: 216 DPPWHSATARNPHGQ 230
>SB_2912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ CS ++ R Y+ +VR + YG+ WSP
Sbjct: 53 LGVLQRNLSSCSVRIKERAYMSLVRPILEYGSVAWSP 89
>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 285
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 615 VHAERHRPDARTGGNPDVALSCRPSTGTSRSNHAPRGPALS-GRRARRVVYLTMP 454
V+ HRP +T P AL+C+ T + HA R LS ARRV+ L+ P
Sbjct: 4 VYFTSHRPTCKTCTFPVTALTCKTCTFPVTALHARRVLHLSPPSHARRVLSLSPP 58
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -1
Query: 571 PGCGSLLQTFHRYLPKQPCPERTCV--KWKESTPCRLSDHASSTGTRASRVRRRVTEVWP 398
PGC S + R P PCP R C W PC + + GT+ + V+E P
Sbjct: 71 PGCLSWRRRRRRRRPP-PCPPRNCAVSAWSSWGPC--THQCGNAGTQTRTRTKTVSEACP 127
>SB_35764| Best HMM Match : RVT_1 (HMM E-Value=8.1e-13)
Length = 362
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 36 GCSAGVRRLYLGVVRSMALYGAPVWSP 116
GC R LYL VVR Y VWSP
Sbjct: 328 GCIRTRRTLYLAVVRPALGYATQVWSP 354
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 379 SGCWRSLAKLQSLADAPSRPWCPCWRHGQIDDTACSPST*RRSSR--GMVASGGTCGRSA 552
+GC + ++Q ++P+ WRH + D A P T + R + + GR+
Sbjct: 3039 NGCTERVGRIQYFPSPRAKPFSFSWRHERPGDWALEPLTPEKYGRVPFAIQAAQLLGRAI 3098
Query: 553 GESHIRVATSAGIRTM 600
G + T AG R M
Sbjct: 3099 GAGLFAI-TPAGERGM 3113
>SB_27893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 36 GCSAGVRRLYLGVVRSMALYGAPVWSP 116
GC R LYL VVR Y VWSP
Sbjct: 167 GCIRTRRTLYLAVVRPALGYATQVWSP 193
>SB_45375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ CS ++ R Y +VR + YG+ WSP
Sbjct: 76 LGVLQRNLSSCSVRIKERAYTSLVRPILEYGSVAWSP 112
>SB_33888| Best HMM Match : RhoGEF (HMM E-Value=1.6)
Length = 354
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ CS ++ R Y +VR + YG+ WSP
Sbjct: 234 LGVLQRNLSSCSVRIKERAYTSLVRPILEYGSVAWSP 270
>SB_38851| Best HMM Match : RVT_1 (HMM E-Value=9.8e-20)
Length = 838
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ CS ++ R Y +VR + YG+ WSP
Sbjct: 433 LGVLQRNLSSCSVRIKERAYTSLVRPILEYGSVAWSP 469
>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -3
Query: 347 STPPPTDSRRAGRPSPTQGLCSA--PVYRSCYLS--LEIPRKGTSEGAGDLPGDRTVPPD 180
+ PPP SRR+ PTQ C PV LS +++ R + E + T+ P
Sbjct: 310 AAPPPEGSRRSSMLLPTQQSCEVDDPVNEDSLLSELMKVQRSHSCEVESKGSPEDTIDPV 369
Query: 179 DSHREHPLRS 150
EH + S
Sbjct: 370 VHRYEHAVHS 379
>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
Length = 664
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -2
Query: 609 AERHRPDARTG-GNPDVALS---CRPSTGTSRSNHAPRGPALSGRRARRVVYLTMPPARA 442
AER A+ G G P +LS C PST +S G + + +Y PA+
Sbjct: 213 AERSLKGAKGGDGTPSPSLSTAPCEPSTSSSCGTPVVPGTGNRRLQTAKDLYGARSPAKD 272
Query: 441 PGP 433
PGP
Sbjct: 273 PGP 275
>SB_15624| Best HMM Match : Phage_G (HMM E-Value=9.5)
Length = 288
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ CS ++ R Y +VR + YG+ WSP
Sbjct: 124 LGVLQRNLSSCSVRIKERAYTSLVRPILEYGSVAWSP 160
>SB_57671| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 533
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 417 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 453
>SB_53749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 55 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 91
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 929 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 965
>SB_17007| Best HMM Match : VWA (HMM E-Value=4.6e-06)
Length = 453
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 327 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTKAWSP 363
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 656 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 692
>SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32)
Length = 823
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 409 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 445
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 337 CSQSVKERAYFSMIRQVMEYASPVWNP 363
>SB_35779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 235 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 271
>SB_30161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 149 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 185
>SB_25515| Best HMM Match : Complex1_LYR (HMM E-Value=9.6)
Length = 304
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 130 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 166
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 29.1 bits (62), Expect = 5.0
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Frame = +1
Query: 412 SLADAPSRPWCPCWRHGQIDDTACSPST*RRSSRGMVASGG-------TCG--RSAGESH 564
S+ PSR P R G T +P++ R SSRG G C +S G++
Sbjct: 561 SITPPPSRTSTPRSRAGSRTRTPPTPTSSRASSRGSAGGGAKTTKTTKKCSTRKSRGQNG 620
Query: 565 IRVATSAGIRTMTLSMHSKRARVGSARGETSSRCWGER 678
+ + T+ +S H R G S+ W R
Sbjct: 621 DTTTKTKCVTTLRVSGHGTNQRGGQVLVGKSNPAWRTR 658
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 861 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 897
>SB_11114| Best HMM Match : UPF0203 (HMM E-Value=9.6)
Length = 197
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 81 LGILQRNLSSCPAAVKEQAYKALVRPLVEYGTEAWSP 117
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 750 CSQSVKERAYFSMIRPVMEYASPVWNP 776
>SB_43617| Best HMM Match : RVT_1 (HMM E-Value=3e-21)
Length = 314
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 254 CSQSVKERAYFSMIRPVMEYASPVWNP 280
>SB_43127| Best HMM Match : DUF1690 (HMM E-Value=2.2)
Length = 449
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 154 CSQSVKERAYFSMIRPVMEYASPVWNP 180
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 30 CSQSVKERAYFSMIRPVMEYASPVWNP 56
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 116 CSQSVKERAYFSMIRPVMEYASPVWNP 142
>SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)
Length = 310
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 538 RYLPKQPCPERTCVKWKESTPCRLSDHASSTGTRASRVRRRVTEVWPSSSS 386
RYLP++PC ++ +E P H SS R++V+E +SS+
Sbjct: 15 RYLPREPCGRSETIEKEEPAPVSPPSHPSSDD---DSNRKQVSEADVTSSN 62
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 75 CSQSVKERAYFSMIRPVMEYASPVWNP 101
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 1457 CSQSVKERAYFSMIRPVMEYASPVWNP 1483
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 75 CSQSVKERAYFSMIRPVMEYASPVWNP 101
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 441 CSQSVKERAYFSMIRPVMEYASPVWNP 467
>SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23)
Length = 409
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 254 CSQSVKERAYFSMIRPVMEYASPVWNP 280
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 669 CSQSVKERAYFSMIRPVMEYASPVWNP 695
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 431 CSQSVKERAYFSMIRPVMEYASPVWNP 457
>SB_8726| Best HMM Match : Pox_F16 (HMM E-Value=5.2)
Length = 244
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 CSAGVR-RLYLGVVRSMALYGAPVWSP 116
CS V+ R Y ++R + Y +PVW+P
Sbjct: 136 CSQSVKERAYFSMIRPVMEYASPVWNP 162
>SB_58751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 LARLLPNVGGCSAGVR-RLYLGVVRSMALYGAPVWSP 116
L L N+ C A V+ + Y +VR + YG WSP
Sbjct: 134 LGILQRNLSPCPAAVKEQAYKALVRPLVEYGTEAWSP 170
>SB_43492| Best HMM Match : Extensin_2 (HMM E-Value=0.34)
Length = 272
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -2
Query: 402 GQAPPATAPSTWRTPDDAQHASTDRQPTGRASVPDSGTV 286
G AP P W P+ R P G A PD V
Sbjct: 102 GTAPEQDPPPPWTVPEQETPVDRARSPRGTAPEPDPPVV 140
>SB_9033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 621 LRVHAER-HRPDARTGGNPDVALSCRPSTGTSRSNHAPRGPALSGRRARRVVYLTMPPA 448
+RVH +R H R G D + ST + S GP LS R R+V + ++P A
Sbjct: 134 IRVHTKRFHFDTTRPHGKNDTK-TITSSTAHAYSRAKWTGPELSRHRFRKVPFSSVPTA 191
>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2409
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 2 TGTSPSSPQRRWLQRRRPASVPGGRAQYGFVRRSRVVARTLCAQCSFAATSAAGARGESH 181
T TSP++P+ W+ + +P V + +R A +L +CS TS RG S
Sbjct: 1461 TPTSPAAPKTLWMDQTQPTDV-------SHLANNRTSASSL--ECSRQMTSCCARRGGSS 1511
Query: 182 QGVPY 196
+ +
Sbjct: 1512 ASIDF 1516
>SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66)
Length = 184
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -3
Query: 194 TVPPDDSHREHPLRS*QQSCIARRECGRPHGSAVQSHTAHDPQVQTPDAGAATTDV 27
T P +SH +HP + + A+ C P + H P T TT V
Sbjct: 89 TTPTHNSHAQHPCTTPMHNTHAQHPCTTPVHNTYAQHPCTTPMHNTHAQHPCTTPV 144
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 376 GSGCWRSLAKLQSLADAPSRPWCPCWRHGQIDDTACSPST 495
G+G +++L K+++ + AP WC C++ D +P T
Sbjct: 640 GNGSFKTLYKMKAKS-APHAKWCKCYKGIPRSDARPTPET 678
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,928,919
Number of Sequences: 59808
Number of extensions: 665685
Number of successful extensions: 2736
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2726
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -