Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H12
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    39   0.005
Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    29   4.4  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
 Frame = -2

Query: 594 PDARTGG-NPDVALSCRPSTGTSRSNH-APRGPALSGRRARRVVYLTMPPARAPGPRGCV 421
           PD + G   PD       +T T++     P GP      A    Y    PA  PGP G  
Sbjct: 211 PDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPPGPAGPAGEDAYAQPSPAGTPGPPGPP 270

Query: 420 GE*LKFGQAPPATAPSTWRTP-DDAQHASTDRQPTGRASVPDSGTVFCA 277
           G+  + G   PA AP T   P  DA +     +  G  + P+ G    A
Sbjct: 271 GKDGEAGPDGPAGAPGTDGAPGPDAAYCPCPPRTLGAGAYPEGGDAAAA 319


>Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.4 protein.
          Length = 290

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = -2

Query: 513 PRGPALSGRRARRVVYLTMPPARAPGPRGCVGE*LKFGQ-----AP-PATAPSTWRTPDD 352
           P  P   G+R+R     T  P+ APGP+G  G   + GQ     AP PA AP     P +
Sbjct: 187 PGAPGQGGQRSRG----TPGPSGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPGN 242

Query: 351 AQHASTDRQPTGRASVPDSGTVFC 280
           A    T   P G A  P     +C
Sbjct: 243 AGTPGTPGAP-GNAGAPGGDAAYC 265


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
 Frame = -2

Query: 513 PRGPALSGRRARRVVYLTMPPARAPGPRGCVGE*LKFGQAPPATAP---STWRTPDDAQH 343
           P  P   G+R+R     T  PA APGP+G  G   + GQ+  A AP        P     
Sbjct: 187 PGAPGQGGQRSRG----TPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPGQ 242

Query: 342 ASTDRQP--TGRASVPDSGTVFC 280
              D QP   G    P     +C
Sbjct: 243 PGQDGQPGAPGNDGAPGGDAAYC 265


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +1

Query: 454 RHGQIDDTACSPST*RRSSRGMVASGGTCGRSAGESHIRVATSAGIRTMTLSMHSKRARV 633
           +HGQ D  +   S    +SRG   +G T     G  H+R A++AG    T     K+A  
Sbjct: 143 KHGQGDLASTDDSGVSSASRGHTPNGST-----GSRHVRAASTAGRFVKTDYEGKKKAHP 197

Query: 634 GSARGETSSR 663
            S   E  ++
Sbjct: 198 ASFANEEKAK 207


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 642 SAPNAGTLRVHAERHRPDARTGGNPDVALSCRPSTGTSRSNHAPRGPAL 496
           S PNA  + +   RHR   R   +P + +  +PS   S+     + PA+
Sbjct: 185 SDPNAKEIHIKGRRHRVSYRQKIDPTLVVDVKPSNKRSQEKRKNQLPAV 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,294,253
Number of Sequences: 27780
Number of extensions: 446476
Number of successful extensions: 1383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)