Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H12
(886 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 31 1.0
At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s... 31 1.3
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 30 2.3
At1g32190.1 68414.m03959 expressed protein 30 2.3
At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C... 29 3.1
At3g25270.1 68416.m03156 hypothetical protein 29 4.1
At2g33310.2 68415.m04083 auxin-responsive protein / indoleacetic... 29 5.4
At2g33310.1 68415.m04082 auxin-responsive protein / indoleacetic... 29 5.4
At5g48060.1 68418.m05938 C2 domain-containing protein contains I... 28 9.5
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s... 28 9.5
At1g61030.1 68414.m06871 expressed protein 28 9.5
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 408 SVTRRRTL-EALVPVLEAWSDRRHGVLSFHLTQVLSGHGCFGRY 536
+VT ++TL ++ +P+L +++D G+++ + HGCF R+
Sbjct: 480 TVTYKKTLVKSKLPILSSYTDATEGLVTHGWITKIEKHGCFVRF 523
>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-2) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
Length = 280
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 35 WLQRRRPASVPGGRAQYGFVRRSRVVARTLCAQCSFAATS 154
WL+R+ PASVPG R+++ C C+ +TS
Sbjct: 163 WLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTS 202
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.9 bits (64), Expect = 2.3
Identities = 33/121 (27%), Positives = 40/121 (33%), Gaps = 9/121 (7%)
Frame = -2
Query: 576 GNPDVALSCRPSTGTSRSNHAPRGPALSGRRARRVVYLTMPPARAPG--PRGC------- 424
G P LS P H GP SG + PP PG PRG
Sbjct: 186 GMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLSNGPPPPMMGPGAFPRGSQFTSGPM 245
Query: 423 VGE*LKFGQAPPATAPSTWRTPDDAQHASTDRQPTGRASVPDSGTVFCAGIPQLLPQPRD 244
+ +GQ PP P T +P + A + PT VP G P P +
Sbjct: 246 MAPPPPYGQ-PPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGGFPYGAPPQQL 304
Query: 243 P 241
P
Sbjct: 305 P 305
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 361 RTPSGGSGCWRSLAKLQSLADAPSRPWCPCWRHGQIDDTACSPST 495
+ PS S C K S P P C CW+ + DT C S+
Sbjct: 344 KKPSCVSSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSS 388
>At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phpsphatase 2C (PP2C)
(GI:7768151) [Fagus sylvatica].
Length = 362
Score = 29.5 bits (63), Expect = 3.1
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Frame = +3
Query: 399 GQTSVT-RRRTLEALVPVLEAWSDRRHGVLSFHLTQVLSGHGCFGRYLWKVCRREPHPGC 575
G +SV RRR +E V + ++S ++ H V GHGC ++ CR H
Sbjct: 79 GVSSVCGRRREMEDAVAIHPSFSSPKNSEFPQHYFGVYDGHGC--SHVAARCRERLHKLV 136
Query: 576 HQCGHPDDDAQHALEACPRWERSRRDLIAVLGGE-----XSPCGLSSPAC 710
+ D + + + +R D V G+ C L +PAC
Sbjct: 137 QEELSSDMEDEEEWKTTMERSFTRMDKEVVSWGDSVVTANCKCDLQTPAC 186
>At3g25270.1 68416.m03156 hypothetical protein
Length = 343
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 459 WSDRRHGVLSFHLTQVLSGHGCFGRYLWKVCRREPHPGCHQCGHPDDDAQHALEAC 626
W + + L ++LSG G L + R HP CH+C D+ +QH C
Sbjct: 19 WKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRN-HPQCHRCCQEDETSQHLFFDC 73
>At2g33310.2 68415.m04083 auxin-responsive protein / indoleacetic
acid-induced protein 13 (IAA13) identical to SP|Q38831
Auxin-responsive protein IAA13 (Indoleacetic
acid-induced protein 13) {Arabidopsis thaliana}
Length = 247
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 325 LSVGGGVLRVIWRTPSGGSGCWRSLAKLQSLADAPS 432
LS+GGG I + SGG G W +L + D PS
Sbjct: 20 LSLGGGTAAKIGK--SGGGGAWGERGRLLTAKDFPS 53
>At2g33310.1 68415.m04082 auxin-responsive protein / indoleacetic
acid-induced protein 13 (IAA13) identical to SP|Q38831
Auxin-responsive protein IAA13 (Indoleacetic
acid-induced protein 13) {Arabidopsis thaliana}
Length = 246
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 325 LSVGGGVLRVIWRTPSGGSGCWRSLAKLQSLADAPS 432
LS+GGG I + SGG G W +L + D PS
Sbjct: 20 LSLGGGTAAKIGK--SGGGGAWGERGRLLTAKDFPS 53
>At5g48060.1 68418.m05938 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1036
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 417 RRRTLEALVPV-LEAWSDRRHGVLSFHLTQVLSGHGCFGRYLWKVC 551
R+ +E ++ V WS RR F + +LSG+ G++L VC
Sbjct: 810 RKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVC 855
>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-1) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
Length = 279
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 35 WLQRRRPASVPGGRAQYGFVRRSRVVARTLCAQCSFAATS 154
WL+R+ PASVP R+++ C C+ +TS
Sbjct: 164 WLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTS 203
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 305 TDARPVGCRSVEACCASSGVRQVEGAVAGGAWPNFSHSPTH 427
T+ VGCR V AC G+ + V G +P+F+ SP +
Sbjct: 627 TNGNSVGCREVAAC---GGLESMAELVV-GHFPSFTRSPLY 663
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,805,327
Number of Sequences: 28952
Number of extensions: 426131
Number of successful extensions: 1427
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -