Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H11
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +3

Query: 141 MPRHLISDAHEWINEIPTVPIYSSMESRGLRWAQFTTRTWSGTRKIFGSCASSRIHGTRR 320
           + +++  DA  W  E   V    ++ +   +WA+ +T     TR++F  C  SR++   R
Sbjct: 45  LKQNISRDAPSWTFEHLFVAFKCAVSNLAKQWAELSTTDKEKTRRMF--CTPSRLNTAHR 102


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 661 KRSPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPPTLR 482
           +R P+   P   P      S+ T SS P +SP P P+A VS++     +   P+ PP+ R
Sbjct: 243 ERVPSLSAPAPPPIPP--PSNGTVSS-PPNSP-PRPIAPVSMNPAINSTSKPPLPPPSSR 298

Query: 481 L 479
           +
Sbjct: 299 V 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,065
Number of Sequences: 5004
Number of extensions: 53345
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)