Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H11
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   7e-12
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   4e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)                     47   2e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 40   0.002
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.004
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  

>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 68.5 bits (160), Expect = 7e-12
 Identities = 33/43 (76%), Positives = 35/43 (81%)
 Frame = -3

Query: 655 SPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR 527
           +PTY TP MS +  R ESSSTGSSFPAD  KPVPLAVVSLDSR
Sbjct: 88  TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSLDSR 130


>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +3

Query: 141 MPRHLISDAHEWINEIPTVPIYSSMESRG 227
           MPRHLISDAHEWINEIPTVPI   ++  G
Sbjct: 1   MPRHLISDAHEWINEIPTVPIIEFLQPGG 29


>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
          Length = 167

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 58  SALNVNVKKFKQARVNGGSNYDSL 129
           +ALNV VKKF QARVNGGSNYDSL
Sbjct: 28  AALNVKVKKFNQARVNGGSNYDSL 51


>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +1

Query: 61  ALNVNVKKFKQARVNGGSNYDSL 129
           ALNV VKKF QARVNG SNYDSL
Sbjct: 2   ALNVKVKKFNQARVNGWSNYDSL 24


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -3

Query: 70  HSEHWAEITLRQHPRGPSQCF 8
           ++EHWAEITLRQH   PSQCF
Sbjct: 48  NNEHWAEITLRQHRFRPSQCF 68


>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = +1

Query: 55  PSALNVNVKKFKQARVNGGSNYDS 126
           PSALNV VKKF QARVNGG   +S
Sbjct: 31  PSALNVKVKKFNQARVNGGDPLES 54


>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 658 RSPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVS 539
           R PT   P +  Y     +S TG +F AD P+ VP+  VS
Sbjct: 117 RRPTDDPPPLPDYVMVRFTSYTGPAFIADDPQVVPIVPVS 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,883,464
Number of Sequences: 59808
Number of extensions: 453070
Number of successful extensions: 954
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)