Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H11
(900 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-793|AAF46079.2| 300|Drosophila melanogaster CG15770-PA... 31 1.6
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 31 2.2
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 31 2.2
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 31 2.2
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 31 2.2
AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA... 30 5.0
AY069830-1|AAL39975.1| 1218|Drosophila melanogaster SD07723p pro... 29 8.7
AE013599-1765|AAF58335.2| 1218|Drosophila melanogaster CG12295-P... 29 8.7
>AE014298-793|AAF46079.2| 300|Drosophila melanogaster CG15770-PA
protein.
Length = 300
Score = 31.5 bits (68), Expect = 1.6
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3
Query: 628 SPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHS-HH--LPMVPPTLRLLGPKHEL 458
+P E ++TG + SP+ P + + L++R H H P+ P T+ + G
Sbjct: 95 APTKTLGEEAATGGDGSSSSPQSSPHSSIRLNTRYTHRIEHSPAPLAPKTVAVNGRVRPR 154
Query: 457 HGTKVPIGSTN*HRPLHSTS 398
G+K T+ PL S++
Sbjct: 155 SGSKSSASPTSVQTPLESSN 174
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 655 SPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPPTLRLL 476
SP Y +P ++ + S TGS++ A SP+ P + S +S P PT R
Sbjct: 1797 SPLY-SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 475 GPKHELHGTKVP 440
P ++ P
Sbjct: 1856 SPTSPMYSPTAP 1867
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 655 SPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPPTLRLL 476
SP Y +P ++ + S TGS++ A SP+ P + S +S P PT R
Sbjct: 316 SPLY-SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 374
Query: 475 GPKHELHGTKVP 440
P ++ P
Sbjct: 375 SPTSPMYSPTAP 386
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 655 SPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPPTLRLL 476
SP Y +P ++ + S TGS++ A SP+ P + S +S P PT R
Sbjct: 1337 SPLY-SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1395
Query: 475 GPKHELHGTKVP 440
P ++ P
Sbjct: 1396 SPTSPMYSPTAP 1407
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 655 SPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPPTLRLL 476
SP Y +P ++ + S TGS++ A SP+ P + S +S P PT R
Sbjct: 1795 SPLY-SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1853
Query: 475 GPKHELHGTKVP 440
P ++ P
Sbjct: 1854 SPTSPMYSPTAP 1865
>AE014297-2568|AAF55584.1| 950|Drosophila melanogaster CG7709-PA
protein.
Length = 950
Score = 29.9 bits (64), Expect = 5.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 655 SPTYXTPXMSPYNARXESSSTGSSFPADSPKP 560
+P++ + S Y A +S+S+G +PA +P+P
Sbjct: 153 APSFNSAPSSSYAAPSQSASSGGPYPAAAPRP 184
>AY069830-1|AAL39975.1| 1218|Drosophila melanogaster SD07723p
protein.
Length = 1218
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 580 PADSPKPVPLAVVSLDSR*GHSHHLPMVPPTLRLLGPKHELHGTKVPIGSTN*HRPLH 407
P D P+P +D G L V P + +L P+ E H T V ++ H P++
Sbjct: 134 PGDPVPPIPTPAPDMDKDIGEP--LIYVQPKVVVLEPRPEFHNTPVNFSVSSVHVPVN 189
>AE013599-1765|AAF58335.2| 1218|Drosophila melanogaster CG12295-PB
protein.
Length = 1218
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 580 PADSPKPVPLAVVSLDSR*GHSHHLPMVPPTLRLLGPKHELHGTKVPIGSTN*HRPLH 407
P D P+P +D G L V P + +L P+ E H T V ++ H P++
Sbjct: 134 PGDPVPPIPTPAPDMDKDIGEP--LIYVQPKVVVLEPRPEFHNTPVNFSVSSVHVPVN 189
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,773,355
Number of Sequences: 53049
Number of extensions: 662889
Number of successful extensions: 1799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4382549442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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