Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H11
(900 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25950.1 68416.m03234 hypothetical protein 29 3.2
At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein si... 29 4.2
At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein si... 29 4.2
At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein si... 29 4.2
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 5.6
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 5.6
At1g31220.1 68414.m03821 phosphoribosylglycinamide formyltransfe... 28 7.3
At5g41920.1 68418.m05104 scarecrow transcription factor family p... 28 9.7
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 9.7
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 252 RTWSGTRKIFGSCASSRIHGTRRALRANHEDCLATKNVGDVSSPRTGRMLVE 407
RTW + + SC S HGT + A+H L T DV S + VE
Sbjct: 35 RTWKQSSHLGASCLMSLFHGTPAVIMASH--ALLTTPRADVHSFASPNTAVE 84
>At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 658 RSPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPP 491
R P+Y T Y +++T +FP D+ P + ++R S+HLP++ P
Sbjct: 437 RDPSYRT---CAYTGSLNANATNGNFPPDALGPASPLGGNANARIIFSYHLPILAP 489
>At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 658 RSPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPP 491
R P+Y T Y +++T +FP D+ P + ++R S+HLP++ P
Sbjct: 437 RDPSYRT---CAYTGSLNANATNGNFPPDALGPASPLGGNANARIIFSYHLPILAP 489
>At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GI:15150341 from [Camellia
sinensis]
Length = 505
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 658 RSPTYXTPXMSPYNARXESSSTGSSFPADSPKPVPLAVVSLDSR*GHSHHLPMVPP 491
R P+Y T Y +++T +FP D+ P + ++R S+HLP++ P
Sbjct: 437 RDPSYRT---CAYTGSLNANATNGNFPPDALGPASPLGGNANARIIFSYHLPILAP 489
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 120 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 10
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 120 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 10
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At1g31220.1 68414.m03821 phosphoribosylglycinamide
formyltransferase similar to phosphoribosylglycinamide
formyltransferase, chloroplast precursor [Arabidopsis
thaliana] SWISS-PROT:P52422
Length = 292
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 207 SSMESRGLRWAQFTTRTWSGTRKIFGSCASSRIHGTRRALRANHEDC 347
SS E R + A F + S RKI C+ ++G L N +DC
Sbjct: 71 SSHEPRRKKLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDC 117
>At5g41920.1 68418.m05104 scarecrow transcription factor family
protein
Length = 405
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 492 GGTMGRWWECPYLLSSETTAKGTGLGESAGKEXPVE 599
G +GR+ E + S+ A G GLGE +G+ VE
Sbjct: 282 GSFLGRFVEALHYYSALFDALGDGLGEESGERFTVE 317
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 652 PTYXTPXMSPYNARXESSSTGSSFPADSPKPVP 554
P P SP + R S GSS + SP P+P
Sbjct: 40 PQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,957
Number of Sequences: 28952
Number of extensions: 310784
Number of successful extensions: 710
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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