Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H10
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0875 + 22103903-22106293 31 0.91
07_01_0373 + 2783596-2784933 31 0.91
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.91
12_02_1174 - 26696869-26698191 31 1.2
06_03_1310 + 29238644-29240260 31 1.6
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 31 1.6
01_06_1224 - 35508842-35510404 30 2.1
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 30 2.8
02_04_0452 + 23044190-23045227 29 3.7
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.7
04_01_0041 - 464695-464850,467485-469029 29 6.4
01_05_0227 - 19512866-19514983 29 6.4
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 6.4
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.5
>08_02_0875 + 22103903-22106293
Length = 796
Score = 31.5 bits (68), Expect = 0.91
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGV-RAGVKASG 679
P+P ++A S R NP+ PDL + +N L A GV AG+ + G
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGPAGIPSDG 554
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.91
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.91
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTP 604
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 519 PYASSHPPLRSRLH-QPDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPVV 683
P PP R+R +P H+ P QPP + P P P P P +KPPVV
Sbjct: 121 PVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPR-PPSVKPPVV 175
>06_03_1310 + 29238644-29240260
Length = 538
Score = 30.7 bits (66), Expect = 1.6
Identities = 35/133 (26%), Positives = 44/133 (33%)
Frame = +3
Query: 474 AGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KE 653
A HPF S ++ P + P R+ L H+ P H PP+ P P P +P
Sbjct: 351 AAHPFDCSKAQCQATPPTTRRPGGRTPL--APHRSPLPHHMPPRRTPPTPPPPSSPTPSH 408
Query: 654 FAPGLKPPVVIRXSISVSHPLVTGHG*RGFAPLFSSE**IXSFAPYXSSFXHXPXPPXIT 833
P PP S P + G +P SS Y P PP T
Sbjct: 409 LPP--PPPTYSESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLP-PLTPPPPTTT 465
Query: 834 PXXKSVXAXTXPS 872
P PS
Sbjct: 466 PPGHHAPVPGTPS 478
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 531 SHPPLRSRLHQPDHQIPDSIHQPP-QT*HPFPSIP*TPY*KEFAPGLKPPV 680
S PPLRS QP P QPP T P + P +P K+ AP PPV
Sbjct: 584 SPPPLRSPPRQPTPP-PSPSQQPPLPTPQPVQASPTSPT-KQHAPPAPPPV 632
>01_06_1224 - 35508842-35510404
Length = 520
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = +3
Query: 519 PYASSH----PPLRS--RLHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPP 677
PY+ SH PPL+ L+ PD H PP P P + P EF GL PP
Sbjct: 25 PYSPSHADLSPPLQEVYSLYNPDDPPASETHLPPYAPPPAPVVSELPDDLEF--GLHPP 81
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 527 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP 631
I PPSPA + S+R S +PR F TP T T+ S +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSP 62
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 602
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPGLKP 674
P S PP + H P Q+P PP P PS+P P +AP +P
Sbjct: 284 PTLQSQPPSQYPGHLPHSQVPPV---PPSA--PVPSVPALPRDPYYAPPAQP 330
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,320,399
Number of Sequences: 37544
Number of extensions: 472325
Number of successful extensions: 1418
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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