Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H10
(872 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 34 0.11
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 33 0.25
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 31 1.3
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 29 5.4
At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /... 28 7.1
At1g50090.1 68414.m05619 aminotransferase class IV family protei... 28 7.1
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 28 9.4
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 9.4
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 34.3 bits (75), Expect = 0.11
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +3
Query: 483 PFILSHYYWRSRPYASSHPPLRSR---LHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KE 653
PF +S +RP+ +S PP S+ + QP + QPP T P P + P +
Sbjct: 488 PFSMSQPSSTARPFPASQPPAASKSFPISQPPTTSKPFVSQPPNTSKPMP-VSQPPTTSK 546
Query: 654 FAPGLKPPVVIRXSISVSHPLVTGHG*RGFAPLFSS 761
P +PP + S S P P+F+S
Sbjct: 547 PLPVSQPPPTFQ-STCPSQPPAASSSLSPLPPVFNS 581
Score = 31.5 bits (68), Expect = 0.76
Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 5/140 (3%)
Frame = +3
Query: 468 QCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDS-----IHQPPQT*HPFPSIP 632
Q A +PF +S S+P++ S P +R P Q P + I QPP T PF S P
Sbjct: 471 QPASNPFPVSQPRPNSQPFSMSQPSSTARPF-PASQPPAASKSFPISQPPTTSKPFVSQP 529
Query: 633 *TPY*KEFAPGLKPPVVIRXSISVSHPLVTGHG*RGFAPLFSSE**IXSFAPYXSSFXHX 812
P + P +PP + + VS P T P +S + P +S
Sbjct: 530 --PNTSKPMPVSQPPTTSK-PLPVSQPPPTFQSTCPSQPPAASS-SLSPLPPVFNSTQSF 585
Query: 813 PXPPXITPXXKSVXAXTXPS 872
PP T A T PS
Sbjct: 586 QSPPVSTTPSAVPEASTIPS 605
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 522 YASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPG 665
Y SS P +RS H P + P + PP T + S P PY E PG
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTTVYSNRSPP-YPYSPEIIPG 487
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 530 KP-PSPAISATSTRSSNPRFHTPTTPDLTSISIN--PLNAVLKGVRAGVKASGCHQXLHQ 700
KP PSP++ + S S NPR P TP T S P++A+ GV A V +S + L Q
Sbjct: 53 KPVPSPSVPSPSVPSPNPR---PVTPPRTPGSSGNCPIDALRLGVCANVLSSLLNIQLGQ 109
Query: 701 RISPP 715
+ P
Sbjct: 110 PSAQP 114
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 525 ASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPVVIRXSISV 704
++SH + + HQP Q+ S PP P PSI K+ AP PP I+ S
Sbjct: 214 STSHSVIHNEDHQPPPQVKQSEPTPPP---PPPSIA----VKQSAPTPSPPPPIKKGSSP 266
Query: 705 SHP 713
S P
Sbjct: 267 SPP 269
>At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 354
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 540 PLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPVVIR 689
P+ H D Q P S++ P P+ P TP+ + AP +PP+ R
Sbjct: 292 PITCSFHTEDSQ-PASLNPQPSA--PYAISPTTPHTQPHAPTTQPPLFFR 338
>At1g50090.1 68414.m05619 aminotransferase class IV family protein
contains Pfam profile: PF01063 aminotransferase class IV
Length = 367
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +1
Query: 310 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPS 489
V+S N S ++K +A V+F A + K V C ++ + N+++TP
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTC----NIFILKGNIVSTPP 256
Query: 490 SSRITIGGLALMHQATLPCDLGY 558
+S + G+ L D+GY
Sbjct: 257 TSGTILPGITRKSICELARDIGY 279
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 313 QSLPNVSSIIKGYRDAY 363
QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
P S PP+ S P H P +H PP H P
Sbjct: 673 PVYSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 707
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
P S PP+ S P H P +H PP H P
Sbjct: 755 PVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 789
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*H--PFPSIP*TPY*KEFAPGLKP 674
P S PP+ S P H P +H PP H P PS +P F+P KP
Sbjct: 770 PVHSPPPPVHSP-PPPVHSPPPPVHSPPPPVHSPPPPSPIYSPPPPVFSPPPKP 822
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,150,533
Number of Sequences: 28952
Number of extensions: 356070
Number of successful extensions: 1145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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