Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H09
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0183 - 21681673-21682524 30 2.7
08_02_0191 + 14041201-14043894,14044354-14044632 29 4.7
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 29 4.7
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 4.7
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 6.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.2
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899... 28 8.2
01_06_0456 + 29521282-29522064 28 8.2
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 707 SQAFIATLLXDPSMSALPIIAKQNRQA 787
SQAF A LL D + +A+P++ Q R A
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>08_02_0191 + 14041201-14043894,14044354-14044632
Length = 990
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 831 RFNPXXVPFDGEQSNAWRFCFAMIGRADIEGSKSNVAMN 715
RF+P V G + + +R + M +D + + SN+A+N
Sbjct: 713 RFSPDSVSIQGSKESNFRVAYLMCRSSDRQLASSNIALN 751
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 671 HLLLKTLYXKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSL--TDVP 498
+L+L LY RA AV + E L Q CP+ ++ LAE+ L +SL + P
Sbjct: 579 NLMLGKLYRISRNNRAAAVCYK-ECLRQ---CPYVFEAITALAEMGLSSKEFSLIFSQAP 634
Query: 497 PQSNSPPGSVLE 462
+ PG L+
Sbjct: 635 NRGGKAPGDSLD 646
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 380 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 559
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 560 RVEQKGK 580
RV+ G+
Sbjct: 114 RVDNGGR 120
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 421 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 510
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 500 PPQSNSPPGSVLEPDHAGVLNGDE 429
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_07_0101 +
41086735-41086809,41088634-41088721,41089727-41089923,
41090077-41090266,41090469-41090860,41091390-41091965
Length = 505
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 438 RRRAFPPRHHSARLERNTVRSSKPEFS 358
RR P HHS L R RSS+ E S
Sbjct: 406 RRSVRSPNHHSPDLRREAARSSRAEVS 432
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 480 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER 391
AW+C P +G+RG +RRR P S R R
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,154,819
Number of Sequences: 37544
Number of extensions: 554204
Number of successful extensions: 1394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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