Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H05
         (883 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    25   4.0  
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    24   7.1  

>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
 Frame = +2

Query: 41  VVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTH--VIN 214
           +VT+++  +  G+D+LA  +EDV + L        E       T +++RR DGT    + 
Sbjct: 202 IVTEMAEVLITGIDMLA-KKEDVERGL----QRALERTAVAATTSLWERR-DGTQRARVR 255

Query: 215 LRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLK 331
           L R    L+L  R VV       V ++ S P  Q++ ++
Sbjct: 256 LPRRDTDLLLDKRIVVG----HSVCLVRSAPKQQQSAVR 290


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 7/31 (22%), Positives = 20/31 (64%)
 Frame = +2

Query: 653 VVVDLFFYRXPEESEKDEQQAKEQAVVPAKP 745
           V+++ ++ R   + + +++  +E A++P KP
Sbjct: 15  VIIEKYYTRLTMDFDTNKRIVEEVAIIPTKP 45


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,283
Number of Sequences: 2352
Number of extensions: 21652
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94680279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)