Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_H04
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.86
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.0
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 4.6
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.6
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 8.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 8.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 540 SPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSISVSHPLV 719
S IS +ST N FH PT TS S A GV + S+ + + SV+
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAY 860
Query: 720 T 722
T
Sbjct: 861 T 861
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.86
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 532 SHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPL-SSEAPS 699
S PP+R + P + PP + P PS P P AP PPL +S APS
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPS 1742
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +2
Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 463
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 464 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 449 DVTVEGVNVLATPSSS 496
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.5
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +1
Query: 520 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPS 699
P A P L + QP +P + PP PFP P P PP AP
Sbjct: 509 PGAPGMPNLN--MSQPP-MVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP---GAPG 562
Query: 700 AYLT--PSSLGMAKGVSPP 750
+Y T S+L GVS P
Sbjct: 563 SYNTSESSNLNAPPGVSMP 581
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 565 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAP--SAYLTPSSLGMAKG 738
P P S +PP + P PSIP P +P PP+ S+AP + L P + A
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
Query: 739 VSPP 750
SPP
Sbjct: 182 KSPP 185
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 537 PSPAISATSTRSSN---PRFHTPTTPD 608
P P+IS T+T SS H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 546 AISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASV 680
A+ ++ S F PTT S+SI+P + V+A V
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADV 113
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,824
Number of Sequences: 5004
Number of extensions: 64486
Number of successful extensions: 269
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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