Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H04
         (874 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    32   0.70 
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.8  
SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)                29   3.8  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   3.8  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               29   5.0  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   5.0  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   5.0  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   5.0  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   29   5.0  
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   29   6.6  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   8.7  
SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34)                    28   8.7  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 415 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLR 549
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PLR
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
 Frame = +1

Query: 475 AGHPFILSHYYWRSRPYASSH------PPLRSRLHQPDHQIPDSIHQPPQT*H-PFPSIP 633
           + HP  + H+  +S P+ SSH      PP +  LH+PD+   +  HQ   T   P  +  
Sbjct: 289 SAHPSQVPHH--KSEPHTSSHKPQLWVPPTQQSLHKPDNPHKNPYHQSSITQQAPKAAEL 346

Query: 634 *TPYXKEFAPGLKPPLSSEAPSAYLTPSSLGM---AKGVSPPYFQ 759
              +    +P  +PP     PSA L     G    A+G  P   Q
Sbjct: 347 KAAHPPSHSPQTQPP--DRQPSASLPAQYQGQQPYAQGPQPQQSQ 389


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 517  RPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAP 696
            +PY +  PP+ S  +Q    +P +    P    P P +P + Y  +  PG+  P +S  P
Sbjct: 905  QPYNTPMPPISSTPYQAPPTLPPTTLTTPSWSQPVP-VP-SMYQPQ-PPGIMQPPTSIPP 961

Query: 697  SAYLTPSSL-GMAKGVSPPYFQ 759
            S  + P S    + G  PP  Q
Sbjct: 962  SQPMAPPSFPPSSMGGFPPSSQ 983


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 457 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 278
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 277 KIE 269
           + E
Sbjct: 335 EEE 337


>SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)
          Length = 168

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 463 RSQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQP---DHQIPDSIHQPPQT*HPFPSIP 633
           +S C  HP     Y    +P   SHP    R +QP   +H I   ++QP    HP  +IP
Sbjct: 31  QSSCINHPVSTILY----QPSCISHPVSTIR-YQPSRINHPISTILYQPSHINHPVSTIP 85

Query: 634 *TP 642
             P
Sbjct: 86  YQP 88


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 594  PTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSI--SVSHPLVTG 725
            PT+P++TS S  P       ++AG +  VV+  ++  SV  P++ G
Sbjct: 1911 PTSPEMTSRSGQPFKRFTKHIKAGDRLRVVMGSTVLKSVLQPVIQG 1956


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = -1

Query: 592  VWNRGFDDRVDVAEIAGEG----GLMHKGE-TANSNARG*RGGQHIDSFNCD---VSSSP 437
            +W++     +DVAE+AG G    GL  +   TA S   G     HID F C    +S  P
Sbjct: 1545 LWHKDTAGHIDVAEVAGGGATNEGLKKRAAYTAQSVEVGLIVNLHIDIFKCGRYLLSGVP 1604

Query: 436  TKVNCD 419
             K+  +
Sbjct: 1605 MKIRLE 1610


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 395 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 505
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +2

Query: 269 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 376
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 24/84 (28%), Positives = 32/84 (38%)
 Frame = +1

Query: 505 YWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLS 684
           Y+  R   S   PL   LH P  Q+P +   P     P   +P     + F P + P   
Sbjct: 191 YFTPRVIHSPRTPLPRVLHSPRTQLP-AYFIPRVLPSPLNQLPAYTTPRYFTPRVLPSPR 249

Query: 685 SEAPSAYLTPSSLGMAKGVSPPYF 756
           ++ P AY T   L       P YF
Sbjct: 250 NQLP-AYTTHRVLHSPHNPLPAYF 272


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
 Frame = +2

Query: 293 KSNSVTVQSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEG 466
           +++ VT Q  P+ S   +  GY D    N+     PS  S  I V  ++ W     T   
Sbjct: 207 EAHIVTEQEAPSCSPEDLAVGYSDGKAHNITWSPIPSNQSNGIIVVYEITWVKVANTTRS 266

Query: 467 VNVLATPSSSRITIGGLALMHQATLPCDLGYINP---IIKSPIPYTNHPRLN 613
              L   SS+  +     L     LPC +  I+     I  P P+T    LN
Sbjct: 267 RRALDAASSANTSSTSYRLTD--LLPCSVYNISVRGYTIAGPGPFTRPLSLN 316


>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 461 EGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIH 619
           E V  + +PS+S +TI G +L   +  P   G  +P + S  P  N P   IH
Sbjct: 560 EVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPPLTSSTPPMN-PSNPIH 611


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 537 PSPAISATSTRSSNPRFHTPTTPDLTS 617
           P+PA + T T+ + P  HTPTTP  T+
Sbjct: 94  PTPATTPTPTKPT-PTAHTPTTPTPTA 119


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/71 (30%), Positives = 26/71 (36%)
 Frame = +1

Query: 514 SRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEA 693
           S P   S P   S  H P      S    P T    PS+P TP           P++   
Sbjct: 662 STPSTPSTPSTPSLTHTPSTPSTPSTPSTPST----PSMPNTPSTPSTPSTPSTPITPGT 717

Query: 694 PSAYLTPSSLG 726
           PS   TPS+ G
Sbjct: 718 PSTPSTPSAPG 728


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
 Frame = +1

Query: 484 PFILSHYYWRSRPYASSHP--PLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEF 657
           P+  S +     P +  +P  P R+  H        S+   P + H  PS         +
Sbjct: 49  PYKTSPFMPPQSPGSMQNPVSPHRTYQHNLPRGSQSSVPPSPHSYHSAPSPSRYAGPSAY 108

Query: 658 APGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYF 756
            PG   P S     +  TPSS+     +SP +F
Sbjct: 109 MPGAISPSSGICTPSCATPSSVMSPGPISPDFF 141


>SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34)
          Length = 108

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +2

Query: 413 IPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPY 592
           +P  + LC +   +++E   + A PS  +I  GG +L+ Q       G++  +  S +PY
Sbjct: 18  LPYELVLCGSLQIMSIENCPLSALPS--QIVAGGPSLVIQ-------GFVFHVSCSWLPY 68

Query: 593 TNHPRLNIHFHQ 628
           ++ PR  I+F +
Sbjct: 69  SSEPRHAINFRE 80


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
 Frame = +1

Query: 565 PDHQIPDSIHQPPQT*HPFPSIP*TPYXKEF---APGLKPPLSSEAPSAYLTPSSLGMAK 735
           P +  P +   PP    P+P  P  PY        P   PP +   P  Y  P +     
Sbjct: 130 PPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPP 189

Query: 736 GVSPPY 753
             +PPY
Sbjct: 190 PPNPPY 195


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 655  FAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRLIXR 798
            FA     P SS++PSA  +P+S       SP  F  + E +   +I +
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,813,811
Number of Sequences: 59808
Number of extensions: 519224
Number of successful extensions: 1786
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)