Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H03
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   262   3e-70
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   253   9e-68
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   249   2e-66
At2g22340.1 68415.m02651 hypothetical protein                          33   0.31 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.41 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.2  
At2g34150.1 68415.m04180 expressed protein                             29   5.1  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   6.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  262 bits (641), Expect = 3e-70
 Identities = 123/215 (57%), Positives = 153/215 (71%), Gaps = 1/215 (0%)
 Frame = +3

Query: 90  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 269
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 270 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 449
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 450 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 629
             DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191

Query: 630 VLPRDQRWXXXXXXXXXXXXEESE-KDEQQAKEQA 731
            +   Q+W            EE++ +DE +A  QA
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQA 226


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  253 bits (620), Expect = 9e-68
 Identities = 117/211 (55%), Positives = 152/211 (72%), Gaps = 1/211 (0%)
 Frame = +3

Query: 102 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 281
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 282 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 461
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 462 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 641
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 642 DQRWXXXXXXXXXXXXEESEKD-EQQAKEQA 731
            Q+W            EE++++ +++A+ QA
Sbjct: 197 AQKWDVMVDLFFYREPEEAKQEGDEEAEVQA 227


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  249 bits (610), Expect = 2e-66
 Identities = 112/184 (60%), Positives = 139/184 (75%)
 Frame = +3

Query: 102 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 281
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 282 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 461
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DH
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136

Query: 462 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 641
           QPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +  
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196

Query: 642 DQRW 653
            Q+W
Sbjct: 197 AQKW 200


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 140 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 259
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 423 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 572
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 378 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 479
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At2g34150.1 68415.m04180 expressed protein
          Length = 700

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 551 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 381
           D  +H+  W      S   +     FSN L  +  +Q +QE+   E S D  S  TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 206 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 328
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,410,278
Number of Sequences: 28952
Number of extensions: 448484
Number of successful extensions: 1116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)