Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H01
         (919 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    44   2e-06
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    44   2e-06
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    41   1e-05
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    40   4e-05
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    40   4e-05
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.4  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 390 GDYALRARVSNNGSXL 437
           G +     V +NGS L
Sbjct: 102 GTFQTNVVVKHNGSCL 117


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 390 GDYALRARVSNNGSXL 437
           G +     V +NGS L
Sbjct: 102 GTFQTNVVVKHNGSCL 117


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 216 NIRESESTVRIXADLQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTA 389
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 390 GDYALRARVSNNGSXL 437
           G +     V + GS L
Sbjct: 102 GTFQTNVVVKHGGSCL 117


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 258 LQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTAGDYALRARVSNNGS 431
           L + W D  L WN  E+ G     ++  +LW+PDV++ N A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 432 XL 437
            L
Sbjct: 116 CL 117


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 258 LQMNWIDXRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN-AGATTAGDYALRARVSNNGS 431
           L + W D  L WN  E+ G     ++  +LW+PDV++ N A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 432 XL 437
            L
Sbjct: 116 CL 117


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -1

Query: 220 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAXS 71
           +++ L C +  T +L S GE+R ++   +     S  + S    + +A S
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAES 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,952
Number of Sequences: 336
Number of extensions: 2315
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)