Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_H01
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.18 
12_01_0524 - 4167867-4168445                                           29   3.9  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 329 HQPSAAAPLPCVPTQSXVDPIHLKICXYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 165
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 326 QPSAAAPLPCVPTQSXVDPIHLKICXYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 147
           QPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 146 CEERVDHEGQ*C 111
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,046,442
Number of Sequences: 37544
Number of extensions: 337255
Number of successful extensions: 1016
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)